PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676741100

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

Protein Properties

Length: 317aa MW: 35529.6 Da PI: 6.5259

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676741100	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	38.1	2.7e-12	23	103	12	93
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 + + l +p +f ++ ++k+ +k +tl++ g+ W++ l+ ++ ++yvl +GWk+ +k+ +L +g + F++dg+++f+++ 676741100 23 SGDDLEIPVSFN-SC-LPKPLPKYVTLKSIYGKIWKMSLRKfGGNLEKYVLLNGWKRIAKDEDLASGHLLEFEFDGSRCFNFC 103 556789999997.66.5678999**************555888888*************************99999554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	8.04E-17	11	106	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.4E-14	12	106	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.448	12	108	IPR003340	B3 DNA binding domain
CDD	cd10017	8.74E-12	12	105	No hit	No description
SMART	SM01019	1.2E-13	14	108	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.9E-10	22	104	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.04E-8	179	269	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	4.0E-5	179	269	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.87	185	281	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MKQGTPADDF LPKFFSVYVP GISGDDLEIP VSFNSCLPKP LPKYVTLKSI YGKIWKMSLR 60 KFGGNLEKYV LLNGWKRIAK DEDLASGHLL EFEFDGSRCF NFCIYEPLTM CKRLRRSSVQ 120 GDVGETGADD EVLVLSDDDV EVVDVADDND AMVDDDDDVD VVVDAADDAR DDDRHYLDDR 180 NNPFFPVTIL PKRRSQLLIP AKVIKDYGLN FPARITVVDP LVKKFGTLAK GIKTQLNGSV 240 FIKGYGSVLR RNSVTSSDKM ICELKKSGNK NMPSLYVTNQ KKLENKTMAN IVQQIFGRNH 300 HVGLPRSDPS YSNFKAA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676741100

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006400878.1	1e-114	B3 domain-containing protein At5g60130
Swissprot	Q9LVG1	7e-91	Y5013_ARATH; B3 domain-containing protein At5g60130
TrEMBL	V4N989	1e-113	V4N989_EUTSA; Uncharacterized protein
STRING	XP_006400878.1	1e-114	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4947	18	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60142.1	2e-49	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]