PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676737946
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 301aa    MW: 35112.9 Da    PI: 7.9923
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676737946genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.99.6e-171658244
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
               ri n+  r +t+ kR++ + KKAeE S+LC+++ ++ii+++t 
  676737946 16 RIANDKTRITTYKKRKACLHKKAEEFSTLCGVQTCLIIYGPTK 58
               89**************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR004041.9E-6929IPR002100Transcription factor, MADS-box
CDDcd002665.62E-231088No hitNo description
SMARTSM004322.3E-101266IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-171295IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.8061267IPR002100Transcription factor, MADS-box
PfamPF003193.0E-151658IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-62944IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-64465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MRLQRIAPDK VVDLQRIAND KTRITTYKKR KACLHKKAEE FSTLCGVQTC LIIYGPTKAT  60
DEVISEPEIW PEDETKARDI IRRYRDTASN SCRKEAHVET YVNDKGKAKE MENSNKRVNN  120
NKNKYCCWEE KLESCSQEQL RGIYDDVGKK LHEAIMRQKH YMIRANHQAM ETQIPQMLMD  180
PHYMSQFLAD HQQQQCLMFP NYNNMSFPLF SPRGDQIPME PNLVENFTDS GVNQGFMMSK  240
GNDGTQFMQR QAPYYNLEPV VPRSASFNVN PFTGYQVPFN IPLRFPGNQI SEWDFMAEKP  300
I
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676737946
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120397.11e-170PREDICTED: agamous-like MADS-box protein AGL82
RefseqXP_013716637.21e-170agamous-like MADS-box protein AGL82
SwissprotQ9FIM01e-132AGL82_ARATH; Agamous-like MADS-box protein AGL82
TrEMBLA0A3P6E8N11e-168A0A3P6E8N1_BRAOL; Uncharacterized protein
STRINGBra002611.1-P1e-166(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59481947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.11e-131AGAMOUS-like 82
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]