PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676733132

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

bZIP

Protein Properties

Length: 427aa MW: 48132.2 Da PI: 6.7333

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676733132	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.8	1.5e-10	181	222	3	41
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 ++k+ rr+++NReAAr+sR+RKka++++Le+ + ++Le+e 676733132 181 QSKALRRLAQNREAARKSRLRKKAYVQQLENsriRLAQLEEE 222 57999************************9833344444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.0E-6	179	250	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.048	181	224	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.2E-7	182	222	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.61E-6	183	223	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.3E-7	185	222	No hit	No description
PROSITE pattern	PS00036	0	186	201	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.7E-10	272	299	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MQSSFKTVPF NTDFYSQASF FFRYIHNLLS TLLVFRPLTS NKRTNLSFST RGDSCLEEFH 60 QPVNGFHHDE TVGLSPNVTI ASNNLHYTTF DTVMECGLRE RLEGEEECLD TGQVLYQRGT 120 RLVGGGVGEV NSSLEKWCDS VSAMADNSQH TDTSTDIDTD DKTQLNGVHQ GMLLATNCSD 180 QSKALRRLAQ NREAARKSRL RKKAYVQQLE NSRIRLAQLE EELKIARQQG CSVERGVSRD 240 NTNVAAGNGA FSFELEYGRW MEEHQRLIND LRAGMWKTPA ERFFMWLGGF RSSELLKILG 300 NHVDPLTDQQ LIGICNLQQS SQQAEDALSQ GMEALQQSLL ETLSSASMGP NSSANVADYM 360 GNMAMAMGKL GTLENFLRQA DLLRQQTLQQ LHRILTTRQA ARAFLVIHDY ICRLRALSSL 420 WLARPRD

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MQSSFKTVPF NTDFYSQASF FFRYIHNLLS TLLVFRPLTS NKRTNLSFST RGDSCLEEFH  60
QPVNGFHHDE TVGLSPNVTI ASNNLHYTTF DTVMECGLRE RLEGEEECLD TGQVLYQRGT  120
RLVGGGVGEV NSSLEKWCDS VSAMADNSQH TDTSTDIDTD DKTQLNGVHQ GMLLATNCSD  180
QSKALRRLAQ NREAARKSRL RKKAYVQQLE NSRIRLAQLE EELKIARQQG CSVERGVSRD  240
NTNVAAGNGA FSFELEYGRW MEEHQRLIND LRAGMWKTPA ERFFMWLGGF RSSELLKILG  300
NHVDPLTDQQ LIGICNLQQS SQQAEDALSQ GMEALQQSLL ETLSSASMGP NSSANVADYM  360
GNMAMAMGKL GTLENFLRQA DLLRQQTLQQ LHRILTTRQA ARAFLVIHDY ICRLRALSSL  420
WLARPRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676733132

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118286	1e-160	AK118286.1 Arabidopsis thaliana At1g68640 mRNA for putative bZip transcription factor PERIANTHIA (PAN) / AtbZip46, complete cds, clone: RAFL19-57-M21.
GenBank	BT008586	1e-160	BT008586.1 Arabidopsis thaliana clone U50929 putative bZIP transcription factor, PERIANTHIA (At1g68640) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013590284.1	0.0	PREDICTED: transcription factor PERIANTHIA isoform X2
Swissprot	Q9SX27	0.0	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	A0A078HPA7	0.0	A0A078HPA7_BRANA; BnaC06g30310D protein
STRING	Bo6g107140.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM667	28	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	0.0	bZIP family protein

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]