PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676732640
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bZIP
Protein Properties Length: 693aa    MW: 77442.6 Da    PI: 9.2747
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676732640genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.31.9e-094282545
               CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
               k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L
  676732640 42 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 82
               7889************************9877777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.8E-738101IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4384084IPR004827Basic-leucine zipper domain
PfamPF001701.8E-64282IPR004827Basic-leucine zipper domain
CDDcd147084.12E-244294No hitNo description
SuperFamilySSF579591.38E-64285No hitNo description
Gene3DG3DSA:1.20.5.1702.7E-74387No hitNo description
PROSITE patternPS0003604560IPR004827Basic-leucine zipper domain
PfamPF141441.6E-32124199IPR025422Transcription factor TGA like domain
PfamPF045255.6E-9327383IPR007612LURP1-related protein domain
SuperFamilySSF545187.06E-9327387IPR025659Tubby C-terminal-like domain
Gene3DG3DSA:3.90.1170.506.6E-4592643IPR000674Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MGDTSPRTSL STDGDTDHNN LMFDGGHVGE SSDRSKDKLD QKTLRRLAQN REAARKSRLR  60
KKAYVQQLEN SRLKLTQLEQ ELQRARQQGV FISSSGDQTH STAGNGAMAF DVEYRRWQED  120
KNKQMKELSS ALDSHASEAE LRTIVDGVIA HYEELFRIKS NAAKNDVFHL LSGMWKTPAE  180
RCFLWLGGFR SSDLLKLIAN QVEPLTEQQS QDLNNLQESS QQAEDALSQG MESLQQSLAD  240
TLSSGTLGSS SSGNVASYMG QMAMAMGKLG TLEGFIRQAD NLRLQTYQQM LRKLTTRQSA  300
RALLAIHEYS LRLRALSSLW LARPRDVVGT YSDDSAEVYH SDALISEVKE KTTFGGFFKG  360
KQDFMIRINA GVDYAFIVSL LVILNEANSI MADRSTPNVD ITTPGAVIIL ALMYLKVDRI  420
RSHLLKALNS TNTLRFGACV RPDFIMLRVI ARNLIKCGAD RIRSHLLKAL NSTNTLRFGA  480
CVRPDFIMLR VIARNLIKCG AELTFVGTRD GNARDLLKNY ALYLLNEVHH PLKSVESKLL  540
EARMRMHQKY LDQFYMLYDD FRITKKLPLL PEEREVPNGS QCGICTPGFL CILSIDYLAA  600
KYSPGFAGLF LAKDVPVDNV IGPAVANEEL FATDFIHSDN HTILFLSSTK PPKYVSHVLG  660
LSMSKVVCKT KRIHFGAKET RSAFIAAAAS FHS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00493DAPTransfer from AT5G06960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676732640
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0588300.0AY058830.1 Arabidopsis thaliana AT5g06960/MOJ9_13 mRNA, complete cds.
GenBankAY1438640.0AY143864.1 Arabidopsis thaliana At5g06960/MOJ9_13 mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06960.21e-177OCS-element binding factor 5