PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676731426
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family WRKY
Protein Properties Length: 967aa    MW: 107806 Da    PI: 9.649
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676731426genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.61.9e-31205261259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                dDgynWrKYGqK++kg e+prsYY+Ct+ +Cpvkkkvers+ d+++++i+Y+g+H+he
  676731426 205 DDGYNWRKYGQKPIKGCEYPRSYYKCTHVNCPVKKKVERSS-DGQITQIIYKGQHDHE 261
                8****************************************.***************8 PP
2WRKY103.89.6e-33350408159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vkg+++prsYY+Ct+a+C+v+k+ver+++d k+v++tYeg+Hnh+
  676731426 350 LDDGYRWRKYGQKVVKGNPHPRSYYKCTTANCTVRKHVERASTDAKAVITTYEGKHNHD 408
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.6E-28195263IPR003657WRKY domain
SuperFamilySSF1182906.02E-25202263IPR003657WRKY domain
SMARTSM007743.4E-35204262IPR003657WRKY domain
PROSITE profilePS5081124.03205263IPR003657WRKY domain
PfamPF031063.9E-24205260IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.9E-36335410IPR003657WRKY domain
SuperFamilySSF1182901.15E-28342410IPR003657WRKY domain
PROSITE profilePS5081137.734345410IPR003657WRKY domain
SMARTSM007743.8E-38350409IPR003657WRKY domain
PfamPF031064.1E-25351408IPR003657WRKY domain
Gene3DG3DSA:3.30.200.202.1E-29451550No hitNo description
PROSITE profilePS5001143.905452737IPR000719Protein kinase domain
SMARTSM002201.5E-89452737IPR000719Protein kinase domain
SuperFamilySSF561123.37E-88455744IPR011009Protein kinase-like domain
PfamPF000692.5E-70456737IPR000719Protein kinase domain
PROSITE patternPS001070458481IPR017441Protein kinase, ATP binding site
CDDcd078401.31E-138458737No hitNo description
Gene3DG3DSA:1.10.510.101.3E-57551808No hitNo description
PROSITE patternPS001080572584IPR008271Serine/threonine-protein kinase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 967 aa     Download sequence    Send to blast
MAVEDDVSSM RTTTLVAPTR PTITVPQRPP TTETAAYFFG GGDGLSLSPG PLSFVSSLFA  60
DSFPDVLTPD NQRTASFSQL LAGAISVSPG SGRSTGGLFA GGGPMFTIPS GFSPSSLLTS  120
PMFFPPQQSP TQTGIVQPQP QSQPQRPDLF PNQMPPSTST AVHGRQSFEA SQANHRARTH  180
YNNNPPSNNN NNRSYNVVNV DKPADDGYNW RKYGQKPIKG CEYPRSYYKC THVNCPVKKK  240
VERSSDGQIT QIIYKGQHDH ERPQNRRGGG GGGRDSGEIG DIHYVGGTGQ MMESSDDSGY  300
AKDRDNDNDD DDEDLPASKM RKIDGGVSTT HRTVTEPKII VQTRSEVDLL DDGYRWRKYG  360
QKVVKGNPHP RSYYKCTTAN CTVRKHVERA STDAKAVITT YEGKHNHDVP AARNGTAAAT  420
SATGETSDHH RMRSMSGNNM QQHMSFGNNN NNTGQSPIGQ GTYSNVFRAC EVSTGRVMAL  480
KKIRVQNFET ENIRFIAREI MILRRLDHPN IMKLEGIIAS RNSNSMYFVF DYMEHDLEGL  540
CSSPDIKFTE AQIKCYMKQL LRGVEHCHLR GIMHRDIKAA NILVNNKGVL KLADFGLANI  600
VTPRNKNQLT SRVVTLWYRA PELLMGSTSY SVSVDLWSVG CVFAEILTGR PLLKGRTEIE  660
QLHKIYKLSG SPNEEFWEKN KLHPQTKMFR PQHQYEGCLR ERFEEFPKTA INLLENLLSI  720
DPEKRGTASS ALMSEYFNSK PYACDPSTLP KYPPNKEMDA KYREELQRRR RVNIKKRDNL  780
SSKKMGKPRK TIKEPINHSK LPTQQETKKE TATEIILQTP SETSQATTRS EFPYTSLSQT  840
TAPASGFAWA GAKKRKENDA ASTLTYNQPP GNASHVSGMS MAFAKNTFGL TINEDKPSFL  900
RPQVSLDSSE MLPFPGVHHK KSEDDTDLTN VGANPKIFQT NGMNEILRRT ESDVRVGVRR  960
PPRIERG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5efq_A2e-7445878219347Cyclin-dependent kinase 13
5efq_C2e-7445878219347Cyclin-dependent kinase 13
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676731426
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0434950.0BT043495.1 Arabidopsis thaliana unknown protein (At3g01085) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408460.10.0probable serine/threonine-protein kinase At1g54610
TrEMBLV4MBR30.0V4MBR3_EUTSA; Uncharacterized protein
STRINGXP_006408460.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13105810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.11e-177WRKY DNA-binding protein 58