PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676729684
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 288aa    MW: 32217.3 Da    PI: 6.5948
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676729684genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000131131323
               ETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
               C+ C+ksF +   L  H+r+H
  676729684 11 CHVCKKSFESGRALGGHMRSH 31
               ********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.96E-5833No hitNo description
SMARTSM003550.072931IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.577936IPR007087Zinc finger, C2H2
PfamPF139123.3E-91031IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576679.83E-8215280No hitNo description
PROSITE profilePS501579.951217244IPR007087Zinc finger, C2H2
SMARTSM003550.54217239IPR015880Zinc finger, C2H2-like
PfamPF139129.0E-11217241IPR007087Zinc finger, C2H2
PROSITE patternPS000280219239IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.600.001255280IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.7E-8257280IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.45258280IPR007087Zinc finger, C2H2
SMARTSM003550.03258280IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280260280IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MYSLLKRTIN CHVCKKSFES GRALGGHMRS HARKLSAPNA ESAVGSTIPS LKTSTILGAN  60
FRPHETVLMR SVQTSEVGVG PKPDLKREEG GQQITGKRKI VVDLDEVDST EPPSEYTAVE  120
EVAFCLVAMS KGQRPENSQH WNAIDRLLAT SEKEEYTGKY IVIDSDDDEK EGKYKSVAEL  180
LASSVSTLTE DNDEEDEEDV DDETYLVTKE KQCKKKFTCD TCGKVLRSYQ ALGGHRTSHR  240
TKRLKMCDKN DQTVVRRYEC EICCKAFESG QALGGHMKVH YVFLQPIN
Cis-element ? help Back to Top
SourceLink
PlantRegMap676729684
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137070.11e-126PREDICTED: zinc finger protein ZAT1
TrEMBLM4D8Z31e-124M4D8Z3_BRARP; Uncharacterized protein
STRINGBra012953.1-P1e-125(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141711523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61470.11e-74C2H2-like zinc finger protein