PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676726196
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HRT-like
Protein Properties Length: 775aa    MW: 85784.6 Da    PI: 9.0821
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676726196genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like53.24.9e-17277307131
   HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                +CGvile+G +C+r+PvkgRKRC eHKG+R+
  676726196 277 VCGVILENGGCCSRSPVKGRKRCLEHKGQRV 307
                7*****************************7 PP
2HRT-like47.72.5e-15336366131
   HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                +CGvil +  +C++ Pv gRKRCe HKGmRi
  676726196 336 MCGVILPNMEPCSKRPVSGRKRCEDHKGMRI 366
                6*****************************7 PP
3HRT-like27.17.1e-09406432228
   HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKG 28 
                C ++++ Gs+C+r+  kg KRC++HK 
  676726196 406 CEATTKTGSPCTRSSPKGSKRCWQHKE 432
                999***********************7 PP
4HRT-like27.26.5e-09452473122
   HRT-like   1 iCGviledGsvCkrqPvkgRKR 22 
                +CGv+  +G +C+r+PvkgRKR
  676726196 452 TCGVKVCNGLICERSPVKGRKR 473
                7********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.3130.103.8E-43517641No hitNo description
SMARTSM009711.7E-39517612IPR010493Serine acetyltransferase, N-terminal
PfamPF064266.6E-31517612IPR010493Serine acetyltransferase, N-terminal
SuperFamilySSF511613.6E-63520744IPR011004Trimeric LpxA-like
TIGRFAMsTIGR011721.7E-64582741IPR005881Serine O-acetyltransferase
CDDcd033545.07E-52639739No hitNo description
Gene3DG3DSA:2.160.10.101.1E-33642749No hitNo description
PfamPF001324.6E-11692725IPR001451Hexapeptide repeat
PROSITE patternPS001010701729IPR018357Hexapeptide transferase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006535Biological Processcysteine biosynthetic process from serine
GO:2000033Biological Processregulation of seed dormancy process
GO:0005737Cellular Componentcytoplasm
GO:0009001Molecular Functionserine O-acetyltransferase activity
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 775 aa     Download sequence    Send to blast
MNFGDGLSFA VVPTVFKRED YKRTKHDDVF SKWKVLIGSN DWEDFKNGKD GVGRYRVQNL  60
PRKSCPGLYE LGVAVIGHDQ TRKLDSDDVL AAYLGQAESV RSRLQRYGRS GAHLRNVNNN  120
FETIESPDKK AVNAGLFEDI FTKDGSIVYR WAPMGSKREA EATEGMLLST FDYAWNKGSN  180
GERRQLDLLK KLGDREFMSK RKSGISRVLF PFLRNQVGIK IKGEKKVLKE ERKLNCEVDE  240
EKKSSNFLTS IIKLSRSRPQ QVSDRFDETD GSCSDSVCGV ILENGGCCSR SPVKGRKRCL  300
EHKGQRVCRV SPEKQKQPQP EIFTGQDFNH EESDVMCGVI LPNMEPCSKR PVSGRKRCED  360
HKGMRINAFL FLLNQTDREK TVKDDKSHPE SPTENINEEE ASTRFCEATT KTGSPCTRSS  420
PKGSKRCWQH KEKTSGDSLP ENVHPVAGKQ VTCGVKVCNG LICERSPVKG RKRIEIGTVG  480
RITTVDFRKH ESNLTDNLLV SLQNYQRLRC VFENAPRRDA EAEPALASYL YSTILSHSSL  540
ERSISFHLGN KLCSSTLLST LLYDLFLNTF TSDPSLRNAT VADLRAARVR DPACISFSHC  600
LLNYKGFLAI QAHRVSHKLW TQSRKPLALA LHSRISDVFA VDIHPAAKIG KGILLDHATG  660
VVVGETAVIG NNVSILHHVT LGGTGKACGD RHPKIGDGCL IGAGATILGN VKIGAGAKVG  720
AGSVVLIDVP PRATAVGNPA RLVGGKEKPT MHDEECPGES MDHTSFISEW SDYII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4n69_A1e-16151777529286Serine Acetyltransferase Apoenzyme
4n69_B1e-16151777529286Serine Acetyltransferase Apoenzyme
4n6a_A1e-16151777529286Serine Acetyltransferase Apoenzyme
4n6a_B1e-16151777529286Serine Acetyltransferase Apoenzyme
4n6b_A1e-16151777529286Serine Acetyltransferase Apoenzyme
4n6b_B1e-16151777529286Serine Acetyltransferase Apoenzyme
4n6b_C1e-16151777529286Serine Acetyltransferase Apoenzyme
4n6b_D1e-16151777529286Serine Acetyltransferase Apoenzyme
4n6b_E1e-16151777529286Serine Acetyltransferase Apoenzyme
4n6b_F1e-16151777529286Serine Acetyltransferase Apoenzyme
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the regulation of cell differentiation in meristems. Probably regulates the expression of various KNAT genes involved in the maintenance of the cells in an undifferentiated, merismastic state. Plays a role in the regulation of gibberellin 20 oxidase and the gibberellin-regulated protein GASA4. Localizes in the nucleus during the cellular differentiation state and may act via a single strand cutting domain (PubMed:17991462). Transcriptional regulator required for the induction of dormancy during late seed development. Interacts genetically with FUS3 and may be component of the same regulatory pathway during embryogenesis. Binds both linear and supercoiled DNA without sequence preference (PubMed:22226340). {ECO:0000269|PubMed:17991462, ECO:0000269|PubMed:22226340}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676726196
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0133920.0AB013392.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK19.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002866167.10.0protein EFFECTOR OF TRANSCRIPTION 2
SwissprotF4K9330.0ET2_ARATH; Protein EFFECTOR OF TRANSCRIPTION 2
TrEMBLD7MM690.0D7MM69_ARALL; Uncharacterized protein
STRINGscaffold_802235.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29542763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.10.0effector of transcription2