PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676725000

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

LBD

Protein Properties

Length: 207aa MW: 22786.7 Da PI: 4.516

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676725000	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.3	5.3e-43	32	131	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r+da++s+vyeA ar+rdPvyG++g i +lq+q+++l+a+la+++ e 676725000 32 PCAACKILRRRCAEKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVE 131 7**********************************************************************************************99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.323	31	132	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-42	32	129	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MEINGGTSAA TPTSSAVAVA AQPPQPPVVL SPCAACKILR RRCAEKCVLA PYFPPTDPAK 60 FTIAHRVFGA SNIIKFLQEL PESQRTDAVN SMVYEAGARM RDPVYGCAGA IYHLQRQVSE 120 LQAQLAKTQV ELVSMQLQRS DLLELLYKIE QTKVSAQEGQ QNMSLESSFE SGDEFISSPD 180 EVTNDLGFLE DNNNNNSSMS WWDPLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-41	24	133	3	112	LOB family transfactor Ramosa2.1
5ly0_B	2e-41	24	133	3	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676725000

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473840	0.0	AB473840.1 Arabidopsis thaliana ASL7 mRNA for ASYMMETRIC LEAVES2-like 7 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009140905.1	1e-132	PREDICTED: LOB domain-containing protein 11
Swissprot	Q9SK08	1e-122	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A291LQZ0	1e-130	A0A291LQZ0_BRARR; Transcription factor LBD11
TrEMBL	A0A397ZLR9	1e-130	A0A397ZLR9_BRACM; Uncharacterized protein
STRING	Bra035698.1-P	1e-131	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1141	28	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	1e-114	LOB domain-containing protein 11