PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 676723654 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 124aa MW: 14062.8 Da PI: 11.0823 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 137 | 2.3e-42 | 2 | 100 | 76 | 170 |
YABBY 76 kveeenlksnvekeesastsvssekl....senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 k+++++++s v+++e+ s+s+s++ + sen +e+pr+pp+ PekrqrvPsaynrfikeeiqrika+nP+ishreafs+aaknWahfP+i fgl 676723654 2 KQHKQHVTSSVTRKECGSSSRSTNPFsttfSENVGREAPRMPPMRPAPEKRQRVPSAYNRFIKEEIQRIKAGNPEISHREAFSTAAKNWAHFPQIRFGL 100 78899999999999999999988877666699999********7777**************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.2E-38 | 3 | 100 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 8.12E-8 | 45 | 94 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 4.5E-5 | 49 | 95 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 124 aa Download sequence Send to blast |
MKQHKQHVTS SVTRKECGSS SRSTNPFSTT FSENVGREAP RMPPMRPAPE KRQRVPSAYN 60 RFIKEEIQRI KAGNPEISHR EAFSTAAKNW AHFPQIRFGL KLDGNKKGKQ SDQTVAGQKS 120 NGYY |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 676723654 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK353326 | 1e-142 | AK353326.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-D23. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013710950.1 | 7e-75 | putative axial regulator YABBY 2 isoform X1 | ||||
Refseq | XP_013710951.1 | 7e-75 | putative axial regulator YABBY 2 isoform X2 | ||||
Swissprot | Q9XFB0 | 2e-69 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A1J3F0Q6 | 4e-75 | A0A1J3F0Q6_NOCCA; Putative axial regulator YABBY 2 | ||||
STRING | Bo5g009010.1 | 3e-74 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5581 | 27 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G08465.1 | 8e-59 | YABBY family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|