PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676714734 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | C2H2 | ||||||||
Protein Properties | Length: 337aa MW: 38293.4 Da PI: 6.8101 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.9 | 7.8e-05 | 179 | 198 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ 676714734 179 FSCPLCFKTFNRYNNMQMHM 198 89*****************9 PP | |||||||
2 | zf-C2H2 | 13.1 | 0.00029 | 263 | 285 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk F k + ++H +++ 676714734 263 FACRRCGKAFAVKGDWRTHEKNC 285 78*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.66 | 179 | 206 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.8E-5 | 179 | 198 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 181 | 201 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.28E-6 | 245 | 283 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.1E-5 | 249 | 283 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.767 | 263 | 283 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MSNPACSNLL NNGFDNTNFN YSTSLSYIYN SHNSFYYPNT TNPNYMAPTT TSTFPNSPPL 60 REALPLLSLS PIRHQEQQDQ HYFMDTDQIS SSNFLDDPHD VTVDLHLGLP NYGVGGSIES 120 YIAPDAITEE QDQDQDHDQG VEVTVDSHLH DDDRHGDLHR GHHYWIPTPA QILIGPTQFS 180 CPLCFKTFNR YNNMQMHMWG HGSQYRKGPE SLRGTQPTGM LRLPCFCCAP GCKNNIDHPR 240 AKPLKDFRTL QTHYKRKHGS RPFACRRCGK AFAVKGDWRT HEKNCGKLWY CSCGSDFKHK 300 RSLKDHVKAF GNGHVPCGID SFGGDHEDYY EASSDIE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00197 | DAP | Transfer from AT1G51220 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676714734 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ311810 | 0.0 | AJ311810.2 Arabidopsis thaliana mRNA for WIP5 protein (At1g51220 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006393069.1 | 0.0 | zinc finger protein WIP5 | ||||
Swissprot | Q8W031 | 0.0 | ZWIP5_ARATH; Zinc finger protein WIP5 | ||||
TrEMBL | V4JXY1 | 0.0 | V4JXY1_EUTSA; Uncharacterized protein | ||||
STRING | XP_006393069.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM239 | 28 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51220.1 | 0.0 | WIP domain protein 5 |
Publications ? help Back to Top | |||
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