PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

57601

Common Name

MICPUN_57601

Organism

Micromonas sp. RCC299

Taxonomic ID

296587

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

bZIP

Protein Properties

Length: 650aa MW: 67136.8 Da PI: 5.3884

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
57601	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.2	3.5e-13	144	202	3	61
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 + kr+ r+++NRe+A+ sRqRKk+++ Le+++ +L a N+++ + + +l+ e +l+ 57601 144 PEKRTARLARNRESAQLSRQRKKQQLSDLERRCRSLHAANSQMHQLVARLSHENHALRH 202 679******************************************99999999988875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.3E-13	140	204	No hit	No description
SMART	SM00338	2.4E-11	142	206	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.484	144	207	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.0E-11	144	202	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.44E-9	146	203	No hit	No description
CDD	cd14704	6.79E-23	147	198	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006990	Biological Process	positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response
GO:0009408	Biological Process	response to heat
GO:0005635	Cellular Component	nuclear envelope
GO:0005654	Cellular Component	nucleoplasm
GO:0005783	Cellular Component	endoplasmic reticulum
GO:0016020	Cellular Component	membrane
GO:0048471	Cellular Component	perinuclear region of cytoplasm
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 650 aa Download sequence Send to blast
MDAPSDRDLT LAPSSSRRFT GESHAARSTA IPGTPEHGPA AHDATASPDV SPAVSIDELP 60 LPPLDPGMLD DHVDPLNVDV LDDFDVAGGS GILDDVFTLD PDQLFVPPGM QQPAGSGAGS 120 LQHSAPGGSL GGSDLEKGFE NEDPEKRTAR LARNRESAQL SRQRKKQQLS DLERRCRSLH 180 AANSQMHQLV ARLSHENHAL RHHIASTGGA PLPPHLQMPA TPPPVVVLPP GATPPPGMVP 240 LHPSMMPQAT KVPLPTNGAT HSCAPTPPEK PTPPEKPGTL RDEVPGSIPP AAAAPAVVAT 300 GGGKRRKATG GGVAAVTAGA LAVLSVVCLA GVGSRTGGSD APAAAGAQLA LGSSARMARH 360 QRRLMSIDAV AKEEEKPIPM RGAGREIALR QPPGVDLWDA RGKASYRREV LRDTAGEDSN 420 IDASNGATAL HRLSSRPPSS GPEASFGEAD PLFAAFRAAG LRADALSRVI CQEMFRWTPG 480 PGNATQTGNG VDVELARRVR VAMEEDEEEE SGDGGGAEDD GEADGTFEKI GRATSAGELL 540 PAAIPLPPSV APDGTGVALN VMGDASRRMT TSAAEAAAAR SISTGRFDGE DDANLVSVLF 600 GRPQSASDAD DDSRLFVVTH SPRSSEYVTY ACRFPRGTYI GSAAAAARS*

Sequence ? help Back to Top

Protein Sequence Length: 650 aa Download sequence Send to blast

MDAPSDRDLT LAPSSSRRFT GESHAARSTA IPGTPEHGPA AHDATASPDV SPAVSIDELP  60
LPPLDPGMLD DHVDPLNVDV LDDFDVAGGS GILDDVFTLD PDQLFVPPGM QQPAGSGAGS  120
LQHSAPGGSL GGSDLEKGFE NEDPEKRTAR LARNRESAQL SRQRKKQQLS DLERRCRSLH  180
AANSQMHQLV ARLSHENHAL RHHIASTGGA PLPPHLQMPA TPPPVVVLPP GATPPPGMVP  240
LHPSMMPQAT KVPLPTNGAT HSCAPTPPEK PTPPEKPGTL RDEVPGSIPP AAAAPAVVAT  300
GGGKRRKATG GGVAAVTAGA LAVLSVVCLA GVGSRTGGSD APAAAGAQLA LGSSARMARH  360
QRRLMSIDAV AKEEEKPIPM RGAGREIALR QPPGVDLWDA RGKASYRREV LRDTAGEDSN  420
IDASNGATAL HRLSSRPPSS GPEASFGEAD PLFAAFRAAG LRADALSRVI CQEMFRWTPG  480
PGNATQTGNG VDVELARRVR VAMEEDEEEE SGDGGGAEDD GEADGTFEKI GRATSAGELL  540
PAAIPLPPSV APDGTGVALN VMGDASRRMT TSAAEAAAAR SISTGRFDGE DDANLVSVLF  600
GRPQSASDAD DDSRLFVVTH SPRSSEYVTY ACRFPRGTYI GSAAAAARS*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00345	DAP	Transfer from AT3G10800	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001325	0.0	CP001325.1 Micromonas sp. RCC299 chromosome 4, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002501636.1	0.0	bZIP DNA-binding transcription factor
TrEMBL	C1E395	0.0	C1E395_MICCC; BZIP DNA-binding transcription factor
STRING	XP_002501636.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5392	8	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10800.1	1e-12	bZIP family protein

Link Out ? help Back to Top
Phytozome	57601
Entrez Gene	8242545

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]