PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 495985
Common NameARALYDRAFT_495985
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 615aa    MW: 67154.6 Da    PI: 5.8875
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
495985genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.11.5e-08258278526
              --SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
              +C+ f++ G C++Gd+C +aHg
   495985 258 PCPEFRK-GSCSRGDTCEYAHG 278
              8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484039.48E-143165IPR020683Ankyrin repeat-containing domain
PfamPF127963.4E-953123IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.209.9E-1457166IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00445787IPR002110Ankyrin repeat
PROSITE profilePS5029713.60257132IPR020683Ankyrin repeat-containing domain
CDDcd002041.93E-1459169No hitNo description
SMARTSM002480.005392124IPR002110Ankyrin repeat
PROSITE profilePS500889.29792127IPR002110Ankyrin repeat
SMARTSM003564.9E-5253279IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-4257280IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.263258280IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-6258278IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4286316IPR000571Zinc finger, CCCH-type
SMARTSM0035640288311IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MGVDELSHLK FSLLLESSAC NDLSGFKSLV EKEGLESIDG SALWYGRRLG SKKMGFEERT  60
PLMIAALFGS KDIVDYIIST GLVDVNRSCG SDGATALHCA VSGLSANSLE IVTLLLKGSA  120
NPDSCDAYGN KPGDMIFPCL SPVFSARMKV LERLLKGNDD LNEVNGQGEG ERKVEVEVEV  180
EVSVSPPRGS ERKEYPVDPT LPDIKNGIYG TDEFRMYAFK IKPCSRAYSH DWTECPFVHP  240
GENARRRDPR KYHYSCVPCP EFRKGSCSRG DTCEYAHGIF ECWLHPAQYR TRLCKDETKC  300
SRRVCFFAHK PEELRPLYPS TGSGVPSPRS SFSSCNSSSA FDMGPISPLP IGASTTPPLS  360
PNGVSSPMGG GKTWMNWPNI TPPALQLPGS RLKSALNARE IDFSEEMQSL TSPTTWNNTP  420
MSAASSPFSG KGMNRLAGGA MSPVNSLSDM FGTEDNTSGL QIRRSVINPQ LHSNSLSSSP  480
VGANSLFSMD TSTVLASRAA EFAKQRSQSF IERSNGWNNH PAISSMTTTC LNDWGSLDGK  540
LDWSVQGDEL QKLRKSTSFR LRAGGMESRL TSEGTGLEEP DVSWVEPLVK EPQETRLAPV  600
WMEQSYMETE QTVA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap495985
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0207550.0AB020755.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MZN1.
GenBankAY0541760.0AY054176.1 Arabidopsis thaliana AT5g58620/mzn1_70 mRNA, complete cds.
GenBankAY1033140.0AY103314.1 Arabidopsis thaliana AT5g58620/mzn1_70 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020887576.10.0zinc finger CCCH domain-containing protein 66
RefseqXP_020887584.10.0zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLD7MQF90.0D7MQF9_ARALL; Zinc finger (CCCH-type) family protein
STRINGfgenesh2_kg.8__1801__AT5G58620.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein