PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 495709 | ||||||||
Common Name | ARALYDRAFT_495709 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 467aa MW: 51217.9 Da PI: 5.4799 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.4 | 0.00099 | 62 | 84 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk+F + L H r H 495709 62 HICGECGKRFVSGKALGGHKRIH 84 68**************9999998 PP | |||||||
2 | zf-C2H2 | 10.9 | 0.0015 | 115 | 135 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C C k F++ L H+r H 495709 115 CCVCYKKFTSMKALYGHMRFH 135 *******************99 PP | |||||||
3 | zf-C2H2 | 11.4 | 0.001 | 319 | 341 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C+ksFs+ L H +H 495709 319 HVCVTCNKSFSSYQALGGHRASH 341 79***********9999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.6E-5 | 59 | 85 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 9.5E-8 | 60 | 135 | No hit | No description |
Pfam | PF13912 | 6.5E-8 | 62 | 84 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.323 | 62 | 89 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.22 | 62 | 84 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 64 | 84 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 4.6 | 113 | 135 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.725 | 113 | 135 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 0.003 | 115 | 136 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 115 | 135 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.91E-8 | 319 | 341 | No hit | No description |
Pfam | PF13912 | 2.2E-10 | 319 | 343 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.38 | 319 | 341 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.577 | 319 | 346 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 321 | 341 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.91E-8 | 383 | 410 | No hit | No description |
PROSITE profile | PS50157 | 9.494 | 388 | 410 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.8E-12 | 388 | 411 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.36 | 388 | 410 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 390 | 410 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MEHLRGYKTN CGFSLGKPRF GSMKVKIPRI QPEEEDDHGA KSMDLEEGDV EEVEEEEEEK 60 KHICGECGKR FVSGKALGGH KRIHALETRK FSMMRPKMVS GMVGRSERGD LEVACCVCYK 120 KFTSMKALYG HMRFHPDRGW KGVLPPPLPH PLGNSSSSTL SIDDHDDEFI SSDYDDDDFD 180 DDDDENSELW DSNLELENVV EPIKGWSTKG KRGSRSALKF DELDLKDPSP EDVKDIDDAN 240 GLLFLATTAE AAANLNVAET SASHSVEEKY LEMVKKRKKK QKRLSEMEKE STSTQDHQLD 300 QVVVAAEEGG GAGARENSHV CVTCNKSFSS YQALGGHRAS HNKVKILENH QARANAEASL 360 LGTEAITTGL ASAQGSNTSL SSSHNGDHVC NICHKSFSTG QALGGHKRCH WTGPVSTEAA 420 TAAPTSAPTA PAGASSSQVT ETVQEVKKLK RKFLEFDLNE LPPNEEE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 274 | 278 | KKRKK |
2 | 274 | 282 | KKRKKKQKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 495709 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB023029 | 0.0 | AB023029.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K24C1. | |||
GenBank | AB493794 | 0.0 | AB493794.1 Arabidopsis thaliana At5g56200 gene for hypothetical protein, partial cds, clone: RAAt5g56200. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020879471.1 | 0.0 | zinc finger protein ZAT4 | ||||
TrEMBL | D7ML89 | 0.0 | D7ML89_ARALL; Uncharacterized protein (Fragment) | ||||
STRING | fgenesh2_kg.8__1525__AT5G56200.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6618 | 24 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56200.1 | 0.0 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | 495709 |
Entrez Gene | 9300517 |