PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 492780 | ||||||||
Common Name | ARALYDRAFT_492780 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | Dof | ||||||||
Protein Properties | Length: 181aa MW: 20167.4 Da PI: 7.9043 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 117.6 | 4.7e-37 | 23 | 79 | 5 | 61 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + c+rCds+ntkfCyynnysl qPryfCk+CrryWt+GG+lrnvP+Gg++r ++++ 492780 23 PRVCARCDSDNTKFCYYNNYSLLQPRYFCKNCRRYWTHGGTLRNVPIGGSSRAKQAR 79 568*************************************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 3.8E-31 | 24 | 77 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 1.0E-24 | 24 | 77 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 26.692 | 24 | 78 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 26 | 62 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MDDLNVFANE DNQVNGVKPT PPPRVCARCD SDNTKFCYYN NYSLLQPRYF CKNCRRYWTH 60 GGTLRNVPIG GSSRAKQARV NQPSVARMVP VEIQPVNHQP FLNVQENINF VGPFGASSSS 120 SDAAVGNHFG SLSDIHGGMV TNVHPTRTFR PNHRLAFPDG SFEQDYYDVG SDNLMVNQQV 180 G |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00116 | ampDAP | Transfer from AT4G21040 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 492780 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493690 | 0.0 | AB493690.1 Arabidopsis thaliana At4g21080 gene for hypothetical protein, partial cds, clone: RAAt4g21080. | |||
GenBank | AL021960 | 0.0 | AL021960.2 Arabidopsis thaliana DNA chromosome 4, BAC clone F7J7 (ESSA project). | |||
GenBank | AL161554 | 0.0 | AL161554.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 54. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020872173.1 | 1e-134 | dof zinc finger protein DOF4.5 | ||||
Swissprot | Q9SUB0 | 6e-96 | DOF43_ARATH; Dof zinc finger protein DOF4.3 | ||||
TrEMBL | D7MFF5 | 1e-132 | D7MFF5_ARALL; Uncharacterized protein (Fragment) | ||||
STRING | fgenesh2_kg.7__2213__AT4G21080.1 | 1e-133 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1602 | 17 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21040.1 | 2e-97 | Dof-type zinc finger domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | 492780 |
Entrez Gene | 9303937 |