PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G21040.1 | ||||||||
Common Name | AtDOF4.3, DOF4.3, T13K14.200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | Dof | ||||||||
Protein Properties | Length: 232aa MW: 26075.6 Da PI: 8.4692 | ||||||||
Description | Dof-type zinc finger domain-containing protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 115.8 | 1.7e-36 | 24 | 80 | 5 | 61 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + c+rCds+ntkfCyynnys qPryfCk+CrryWt+GGalrnvP+Gg++r ++++ AT4G21040.1 24 PRVCARCDSDNTKFCYYNNYSEFQPRYFCKNCRRYWTHGGALRNVPIGGSSRAKRTR 80 578*************************************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 6.6E-30 | 25 | 78 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 8.0E-27 | 25 | 78 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 26.767 | 25 | 79 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 27 | 63 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009001 | anatomy | fruit |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MDNFNVVANE DNQVNDVKPP PPPPRVCARC DSDNTKFCYY NNYSEFQPRY FCKNCRRYWT 60 HGGALRNVPI GGSSRAKRTR INQPSVAQMV SVGIQPGSHK PFFNVQENND FVGSFGASSS 120 SFVAAVGNRF SSLSHIHGGM VTNVHPTQTF RPNHRLAFHN GSFEQDYYDV GSDNLLVNQQ 180 VGGYVDNHNG YHMNQVDQYN WNQSFNNAMN MNYNNASTSG RMHPSHLEKG GP |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT4G21040 | |||||
AtGenExpress | AT4G21040 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00116 | ampDAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G21040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT1G14920 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G21040 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL080282 | 0.0 | AL080282.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T13K14 (ESSA project). | |||
GenBank | AL161554 | 0.0 | AL161554.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 54. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_193836.1 | 1e-173 | Dof-type zinc finger domain-containing protein | ||||
Swissprot | Q9SUB0 | 1e-174 | DOF43_ARATH; Dof zinc finger protein DOF4.3 | ||||
TrEMBL | A0A178UUE0 | 1e-172 | A0A178UUE0_ARATH; DOF4.3 | ||||
STRING | AT4G21040.1 | 1e-173 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1602 | 17 | 89 | Representative plant | OGRP38 | 17 | 445 |
Link Out ? help Back to Top | |
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Phytozome | AT4G21040.1 |
Entrez Gene | 827851 |
iHOP | AT4G21040 |
wikigenes | AT4G21040 |