PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 487349 | ||||||||
Common Name | ARALYDRAFT_487349 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | Trihelix | ||||||||
Protein Properties | Length: 248aa MW: 28089.7 Da PI: 8.6583 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 36.7 | 1.1e-11 | 23 | 105 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++ + +L+ea ++ +l+ g+l+++++++v++++ + g +++ +qCk++++ l+k+yk +k+ + st++++++l+ 487349 23 WSEEATATLVEAWGNRYVKLNHGNLRQNDLKDVADAVnsrhGDNGRKKTDIQCKNRIDTLKKKYKTEKAKLSP------STWRFYNRLD 105 *************************************998888999**********************99986......68****9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.1E-22 | 21 | 106 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
METTPQSKPS VSHRPPVGRE DWWSEEATAT LVEAWGNRYV KLNHGNLRQN DLKDVADAVN 60 SRHGDNGRKK TDIQCKNRID TLKKKYKTEK AKLSPSTWRF YNRLDVLIGP VVKKSAGGVV 120 KSAPFINPSH LNPTGSKSNG SSLDDDDDDD DEVGDWEFVA RKHPRVEEVD LSEGSTCREL 180 ATAILKFGEV YERIEGKKQQ MMLELEKQRM EVTKEVELQR INMLMEMQLE IEKSKHRKRG 240 GGSGKQL* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00488 | DAP | Transfer from AT5G05550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 487349 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC237332 | 0.0 | AC237332.1 Arabidopsis lyrata clone JGIFAFI-57L22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002873212.1 | 0.0 | trihelix transcription factor ASIL2 | ||||
TrEMBL | D7LYY3 | 0.0 | D7LYY3_ARALL; Transcription factor | ||||
STRING | fgenesh2_kg.6__483__AT5G05550.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4926 | 21 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05550.1 | 1e-134 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | 487349 |
Entrez Gene | 9307238 |