PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 479452
Common NameARALYDRAFT_479452
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 390aa    MW: 43432.5 Da    PI: 7.3752
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
479452genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH283.9e-09107131126
              --S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
              ykt+ C  f++ GtC+ G+ C+FaHg
   479452 107 YKTRMCAKFRA-GTCRNGELCNFAHG 131
              9**********.*************8 PP
2zf-CCCH19.51.7e-061972111125
              GTS.--TTTTT-SS-S CS
  zf-CCCH  11 rtG.tCkyGdrCkFaH 25 
                G +C+yGdrC+F+H
   479452 197 F-GeECPYGDRCNFIH 211
              5.449*********** PP
3zf-CCCH437.7e-14273299127
              --S---SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
              +kt+lC+ f  tG+C++Gd+C+FaHg+
   479452 273 WKTRLCMKFDITGQCPFGDKCHFAHGQ 299
              8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.9E-15104139IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-8105137IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-4106132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793106133IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-5107131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6186212IPR000571Zinc finger, CCCH-type
SMARTSM003560.0036186213IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.455186214IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-8188212IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.13E-9268303IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-15270302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.253272300IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-7272299IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-11273299IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MDSSYSDSRP MFVQSPYGGW NQTQMIDSMA NPTNNEQGDL HSLSESQSQS QSQPPQQLQP  60
ALKRPRLVDD NVFNPASSFP QPSSSNPWMV PSLNPPPVNK GTANIFYKTR MCAKFRAGTC  120
RNGELCNFAH GIEDLRQPPS NWQEIVGPPP GQDREKERER ERERERERPS LAPVANNNWE  180
DDQKIILRMK LCRKFCFGEE CPYGDRCNFI HEDLSKFRED SGKLRESSVI SVGTSAADPP  240
SDTASNHIEV NRQGSIPVPA PMNNGGVVKT VYWKTRLCMK FDITGQCPFG DKCHFAHGQT  300
ELHNSVGRVD GEAVNATASV SKQTVVPANE AFAMKPTTQV TADSSGLNEE GRRKKCLLKW  360
SDSKKINRIY GDWIDDLPVG QKSSKPVES*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157167RERERERERER
Cis-element ? help Back to Top
SourceLink
PlantRegMap479452
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0372260.0AY037226.1 Arabidopsis thaliana AT3g19360/MLD14_8 mRNA, complete cds.
GenBankAY0817450.0AY081745.1 Arabidopsis thaliana AT3g19360/MLD14_8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002883175.10.0zinc finger CCCH domain-containing protein 39
RefseqXP_020889430.10.0zinc finger CCCH domain-containing protein 39
SwissprotQ9LT810.0C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLD7L9Y40.0D7L9Y4_ARALL; Zinc finger (CCCH-type) family protein
STRINGfgenesh2_kg.3__2153__AT3G19360.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100662536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.10.0C3H family protein