PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 478469
Common NameARALYDRAFT_478469
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 265aa    MW: 29497 Da    PI: 7.2958
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
478469genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.2e-073378346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT+eE + + +a + +  +   +W ++a++++ g+t  ++   + k
           478469 33 SWTKEENKMFERALAIYAEDspdRWFKVASMIP-GKTVLDVMKQYSK 78
                     7*****************99*************.****999988876 PP
2Myb_DNA-binding39.99.9e-13129173347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
           478469 129 PWTEEEHRRFLLGLLKYGKGDWRNISRNFVVSKTPTQVASHAQKY 173
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.3612982IPR017884SANT domain
SMARTSM007171.3E-83082IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-43077IPR009057Homeodomain-like
SuperFamilySSF466891.65E-113287IPR009057Homeodomain-like
PfamPF002493.0E-63378IPR001005SANT/Myb domain
CDDcd001678.00E-83479No hitNo description
PROSITE profilePS5129418.577122178IPR017930Myb domain
SuperFamilySSF466892.3E-15124177IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-17125177IPR006447Myb domain, plants
SMARTSM007171.7E-10126176IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-11126178IPR009057Homeodomain-like
PfamPF002494.3E-10129173IPR001005SANT/Myb domain
CDDcd001674.26E-9129173No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
METLHPFSHL PISDHRFVVQ EMVSLHSSSS SSSWTKEENK MFERALAIYA EDSPDRWFKV  60
ASMIPGKTVL DVMKQYSKLE EDVFDIEAGR VPIPGYPAAS SPLAFDPDTC RKRPNGARGS  120
DQDRKKGVPW TEEEHRRFLL GLLKYGKGDW RNISRNFVVS KTPTQVASHA QKYYQRQLSG  180
AKDKRRPSIH DITTGNLLNA NLNRSFSDHT GILPDLGFID KDNAEDGVIF MGQNVSSENL  240
FSPSPTSFEA AINFAGQNAF SAGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1627111488RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00347DAPTransfer from AT3G11280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap478469
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0561800.0AY056180.1 Arabidopsis thaliana putative MYB-family transcription factor (At3g11280) mRNA, complete cds.
GenBankAY0912650.0AY091265.1 Arabidopsis thaliana putative MYB-family transcription factor (At3g11280) mRNA, complete cds.
GenBankAY5503080.0AY550308.1 Arabidopsis thaliana MYB transcription factor (At3g11280) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002884839.10.0transcription factor DIVARICATA
RefseqXP_020888299.10.0transcription factor DIVARICATA
SwissprotQ8S9H74e-72DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLD7L9W10.0D7L9W1_ARALL; Myb family transcription factor
STRINGfgenesh2_kg.3__1170__AT3G11280.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43402657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.20.0MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]