PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 475990
Common NameARALYDRAFT_475990
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 447aa    MW: 50027.2 Da    PI: 6.2362
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
475990genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.73.4e-10158200342
             XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHH CS
  bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeaeN 42 
             e +  rr+++NReAAr+sR+RKka++++Le+   + ++Le+e 
  475990 158 EQRTLRRLAQNREAARKSRLRKKAYVQQLENsriRLAQLEEEL 200
             567789***********************98333555555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.7E-7156227IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.347158202IPR004827Basic-leucine zipper domain
PfamPF001703.9E-7160200IPR004827Basic-leucine zipper domain
CDDcd147081.34E-20160208No hitNo description
SuperFamilySSF579591.0E-6160202No hitNo description
Gene3DG3DSA:1.20.5.1708.6E-8162205No hitNo description
PROSITE patternPS000360163178IPR004827Basic-leucine zipper domain
PfamPF141441.3E-27245318IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MQSSFKTVPF NPDFYSQSSF FFRGDSCLEE FHQPVNGFHH EEAIDLSPNV TIASANLHYT  60
TFDTVMDCGG GGGLRERLEG EEECLDTGQL LYQKGTRLVG GEVNSSWCDS VSAMADNSQH  120
TDTSTDIDTD DKTQLNGVHQ GMLLATNCSD QSKVKSCEQR TLRRLAQNRE AARKSRLRKK  180
AYVQQLENSR IRLAQLEEEL KRARQQGSLV ESGVSADHTH LAAGNGAFSF ELEYTRWKEE  240
HQKLINDLRS GVNSQLGDND LRVLVDAVMS HYDEIFRLKG IGTKVDVFHM LSGMWKTPAE  300
RFFMWLGGFR SSELLKILGN HVDPLTDQQL IGICNLQQSS QQAEDALSQG MEALQQSLLE  360
TLSSASMGPN SSANVADYMG HMAMAMGKLG TLENFLRQAD LLRQQTLQQL HRILTTRQAA  420
RAFLVIHDYI SRLRALSSLW LARPRD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269|PubMed:19395638, ECO:0000269|PubMed:19395639, ECO:0000269|PubMed:9990857}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap475990
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1182860.0AK118286.1 Arabidopsis thaliana At1g68640 mRNA for putative bZip transcription factor PERIANTHIA (PAN) / AtbZip46, complete cds, clone: RAFL19-57-M21.
GenBankBT0085860.0BT008586.1 Arabidopsis thaliana clone U50929 putative bZIP transcription factor, PERIANTHIA (At1g68640) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020889619.10.0transcription factor PERIANTHIA isoform X1
SwissprotQ9SX270.0PAN_ARATH; Transcription factor PERIANTHIA
TrEMBLD7KWE60.0D7KWE6_ARALL; Transcription factor perianthia
STRINGfgenesh2_kg.2__1120__AT1G68640.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.10.0bZIP family protein
Publications ? help Back to Top
  1. Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU
    The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control.
    Front Plant Sci, 2011. 2: p. 79
    [PMID:22645551]
  2. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  3. Wynn AN,Seaman AA,Jones AL,Franks RG
    Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development.
    Front Plant Sci, 2014. 5: p. 130
    [PMID:24778638]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. de Luis Balaguer MA, et al.
    Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640
    [PMID:28827319]