PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 471652 | ||||||||
Common Name | ARALYDRAFT_471652 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ZF-HD | ||||||||
Protein Properties | Length: 169aa MW: 19773.4 Da PI: 9.4736 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 78.6 | 8.1e-25 | 3 | 52 | 2 | 57 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 ++++Y+eC++NhAa+lG++a+DGC+Ef +s a++ C ACgCHR++HRr 471652 3 SSCVYRECMRNHAAKLGSYAIDGCREFSQS------ATGDLCVACGCHRSYHRRID 52 5789*************************9......67789*************76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-20 | 4 | 50 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 3.2E-18 | 6 | 50 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 18.439 | 7 | 51 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.2E-16 | 7 | 50 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-17 | 92 | 165 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.25E-7 | 97 | 164 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.4E-30 | 106 | 165 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MQSSCVYREC MRNHAAKLGS YAIDGCREFS QSATGDLCVA CGCHRSYHRR IDVISSAQVT 60 HTRFPFTSLR RVKQLARLKW KTAEERNEEE EEDTEETSAE EKMTVQRRRK SKFTAEQREA 120 MKEYAAKLGW TLKDKRALRE EIRVFCEGIG VSRYLFKTWV NNNKKFYH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 105 | 110 | QRRRKS |
2 | 106 | 111 | RRRKSK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00143 | DAP | Transfer from AT1G14687 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 471652 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC006917 | 0.0 | AC006917.6 Genomic sequence for Arabidopsis thaliana BAC F10B6 from chromosome I, complete sequence. | |||
GenBank | AY086523 | 0.0 | AY086523.1 Arabidopsis thaliana clone 25577 mRNA, complete sequence. | |||
GenBank | BT003942 | 0.0 | BT003942.1 Arabidopsis thaliana clone RAFL15-16-E16 (R20740) unknown protein (At1g14687) mRNA, complete cds. | |||
GenBank | BT005027 | 0.0 | BT005027.1 Arabidopsis thaliana clone U20740 unknown protein (At1g14687) mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002890071.1 | 1e-123 | zinc-finger homeodomain protein 14 | ||||
Swissprot | Q9LQW3 | 1e-101 | ZHD14_ARATH; Zinc-finger homeodomain protein 14 | ||||
TrEMBL | D7KCI5 | 1e-121 | D7KCI5_ARALL; ATHB32 | ||||
STRING | fgenesh2_kg.1__1606__AT1G14687.1 | 1e-122 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13728 | 21 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14687.1 | 1e-102 | homeobox protein 32 |
Link Out ? help Back to Top | |
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Phytozome | 471652 |
Entrez Gene | 9328884 |