PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462965317
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 303aa    MW: 31977.2 Da    PI: 10.1844
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462965317genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.74.9e-09222263955
                HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 + RR+ri +++  L+el+P+      +K++ +++LekA+ Y+k Lq
  462965317 222 AKVRRERIAEKLKILQELVPNG-----TKVDLVTMLEKAITYVKFLQ 263
                589*****************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.246213262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-11214271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-12215274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.53E-11215267No hitNo description
SMARTSM003533.6E-10219268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-6223263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MYREGTSKLE LMLRPICLVK KDAHAGYHSH TSQYSLFAKG EQTSHCGGGG ATAAAAPAGD  60
VRRRALLHVP RALRLPRRRP LPGLQLAFDD NFKAGGCGHA DYYSWAGYGG GGGSGASSSS  120
SSSVLSFEQA GSGGRHLAYS TGGGDDDCAM WMDAAAGMVD HSYGVLAASS RRPRQRRSVH  180
HGGDQVQAAP AAKKQCAGSG GGRKSKAKAA PAPTKDPQSV AAKVRRERIA EKLKILQELV  240
PNGTKVDLVT MLEKAITYVK FLQLQVKVLA ADEFWPAQGG KAPELSQVKD ALDAILSSQH  300
TNK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462965317
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455315.12e-86transcription factor bHLH69
TrEMBLC5XEV75e-85C5XEV7_SORBI; Uncharacterized protein
STRINGSb03g008290.18e-86(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.13e-47ROOT HAIR DEFECTIVE6