PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462959430
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family TALE
Protein Properties Length: 344aa    MW: 37665.5 Da    PI: 5.2753
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462959430genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.41.3e-09243299255
                T--SS--HHHHHHHHHHHH...HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFe...knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                +k+ +++ke  + L    e   k +yps++e+  LA+ +gL+++q+ +WF N+R ++
  462959430 243 KKKGKLSKEARQKLLHWWEqhyKWPYPSETEKIALAAATGLDQKQINNWFINQRKRH 299
                5666666666666666666322479*****************************885 PP
2ELK42.99.7e-15219240122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELKhqLlrKY+gyLg+L+qEFs
  462959430 219 ELKHQLLRKYGGYLGGLRQEFS 240
                9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012556.2E-1991135IPR005540KNOX1
PfamPF037907.6E-2192132IPR005540KNOX1
SMARTSM012563.5E-28138189IPR005541KNOX2
PfamPF037916.8E-24143188IPR005541KNOX2
PfamPF037893.7E-11219240IPR005539ELK domain
PROSITE profilePS5121311.575219239IPR005539ELK domain
SMARTSM011884.2E-8219240IPR005539ELK domain
PROSITE profilePS5007113.281239302IPR001356Homeobox domain
SuperFamilySSF466892.57E-20240309IPR009057Homeodomain-like
SMARTSM003892.1E-13241306IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.2E-28244305IPR009057Homeodomain-like
CDDcd000862.97E-13251302No hitNo description
PfamPF059202.0E-17259298IPR008422Homeobox KN domain
PROSITE patternPS000270277300IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MESFVDLGGG GSSRSTSNAS FLQLPLPAAA SASSSASAQA IPPEAQQDRS RLALQQLLVA  60
PSSSVPASRH GHQKDVDGAV VQGEISPADA ETIKSKIMSH PQYSALLAAY LDCQKVGAPP  120
DVSDRLSAGG GELDXXXXXX PARADPELDQ FMEAYCNMLV KYQEELTRPI QEAAEFFKSV  180
ERQLDSITDN SAGEGAGSSE DDQDTSCAED VDPSAEDKEL KHQLLRKYGG YLGGLRQEFS  240
KRKKKGKLSK EARQKLLHWW EQHYKWPYPS ETEKIALAAA TGLDQKQINN WFINQRKRHW  300
KPTSEDMPFG TMMEGGGFHV PQGASAAMYL DRPFMADGLY RLGS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}.
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:9869405}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00671PBMTransfer from GRMZM2G135447Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462959430
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795146.11e-172homeobox protein knotted-1-like 12 isoform X3
SwissprotO650341e-118KNOSC_ORYSI; Homeobox protein knotted-1-like 12
SwissprotO804161e-118KNOSC_ORYSJ; Homeobox protein knotted-1-like 12
TrEMBLA0A0A9GAR10.0A0A0A9GAR1_ARUDO; Uncharacterized protein
STRINGPavir.Ia00428.1.p1e-158(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40613873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-88KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Sato Y, et al.
    Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
    EMBO J., 1999. 18(4): p. 992-1002
    [PMID:10022841]
  2. Ito Y,Eiguchi M,Kurata N
    KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
    Genesis, 2001. 30(4): p. 231-8
    [PMID:11536429]
  3. Nagasaki H,Sakamoto T,Sato Y,Matsuoka M
    Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15.
    Plant Cell, 2001. 13(9): p. 2085-98
    [PMID:11549765]
  4. Postma-Haarsma AD, et al.
    Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
    Plant Mol. Biol., 2002. 48(4): p. 423-41
    [PMID:11908517]
  5. Kuijt SJ, et al.
    Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
    Plant Mol. Biol., 2004. 55(6): p. 781-96
    [PMID:15604716]
  6. Yin H, et al.
    SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice.
    Planta, 2013. 237(1): p. 15-27
    [PMID:22956125]