PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462955285
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 378aa    MW: 41014.6 Da    PI: 10.6408
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462955285genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.22.6e-31313371259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYeg+Hnh+
  462955285 313 ADEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPSMLIVTYEGDHNHN 371
                69*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.3E-13268310IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.806.3E-34300372IPR003657WRKY domain
PROSITE profilePS5081129.757307373IPR003657WRKY domain
SuperFamilySSF1182908.24E-27310371IPR003657WRKY domain
SMARTSM007742.5E-38312372IPR003657WRKY domain
PfamPF031068.2E-27314370IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MEGMEEANRA AVQSCHRVLN LLSNPRGQLV PNKDLVAATG EAVSKFGSLT SKLANGNARQ  60
GHARVRRIKK PLPIIDSNLF LESSAVAGAA TAGHLQLFPR YQQGEGSSSK DPVRIPPQFP  120
KRLLLENPVV DLEGPSQTPP IQLVQPVSVA PPAGTPHPAL PAAHLHFIQQ HQSYQRFQFM  180
QQMKIQSEMM KRSSLGDQGQ GGSNSAGGKG VNLKFDSSNC TASSSRSFLS SLSMEGSLAS  240
LDGSRASRPF QLLSGSQTSS TPELGGQRRR CTGKEDGSGR CATRCHCAKK RKLRIRRSIK  300
VPAISNKVAD IPADEFSWRK YGQKPIKGSP HPRGYYKCSS VRGCPARKHV ERCVDDPSML  360
IVTYEGDHNH NRVLAQPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-193103711272WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462955285
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632919.10.0protein WRKY1
SwissprotQ32SG40.0WRKY1_MAIZE; Protein WRKY1
TrEMBLA0A0E0D6P50.0A0A0E0D6P5_9ORYZ; Uncharacterized protein
STRINGOMERI03G30220.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102503242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.16e-63WRKY DNA-binding protein 74