PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462950678
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 670aa    MW: 73717 Da    PI: 6.1035
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462950678genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-13324369454
                HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+iLe A+ +I +L
  462950678 324 SHVEAERQRREKLNKRFCALRAVVPNiS------KVDKASILEDAIAHIADL 369
                799***********************66......***************998 PP
2HLH42.61.1e-13554599454
                HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+iLe A+ +I +L
  462950678 554 SHVEAERQRREKLNKRFCALRAVVPNiS------KVDKASILEDAIAHIADL 599
                799***********************66......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.5E-4854243IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000834.47E-14318373No hitNo description
PROSITE profilePS5088816.666320369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-16323382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-16324383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-11324369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-14326375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF142155.1E-16396473IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000834.47E-14548603No hitNo description
PROSITE profilePS5088816.666550599IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-17553614IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-16554614IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-11554599IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-14556605IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MKTEIEEIAT GGSWTEEEKS LCSSVLGSDA FTYLSKGGHA ISEGLVTTST LVDLQNKLQN  60
LVEADSQSFR WNYAIFWQLS RTKFGDIVLG WGDGCCREPH DSEMGSAAPI IIDDVPPVTK  120
QRMRKRVLQR LHATFGGADE EDFAPGIDQV TDTEIFFLTS MYFTFPRQVG GPGKVYASGA  180
PLWVPNNDPK ISPANYCYRG FLANAAGFKT IVLLPFETGV LELGSMKKVP ESVEALETIR  240
SAFSGALSNR TAIIKHDENG SVQASQGLAK IFGNNLNFSQ PLASKGVAAP NVEGSSWDPQ  300
KSNNELHMES DSRAEFSSTE EPLSHVEAER QRREKLNKRF CALRAVVPNI SKVDKASILE  360
DAIAHIADLK KKLTELEAEK EKSEHPECRD QPGQVTYTRN YSSKVYASGA PLWVPNNDPK  420
ISPANYCYRG FLANAAGFKT IVLLPFETGV LELGSMKKVP ESVEALETIR SAFSGALSNR  480
TAIIKHDENG SVQASQGLAK IFGNNLNFSQ PLASKGVAAP NVEGSSWDPQ KSNNELHMES  540
DSRAEFSSTE EPLSHVEAER QRREKLNKRF CALRAVVPNI SKVDKASILE DAIAHIADLK  600
KKLTELEAEK EKSNYTLKCT KRSGPSNLDG HRTNQPELDG AAETEICCER ATGRLNPKRF  660
QSGILEVYFW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-22320610464Transcription factor MYC2
5gnj_B8e-22320610464Transcription factor MYC2
5gnj_E8e-22320610464Transcription factor MYC2
5gnj_F8e-22320610464Transcription factor MYC2
5gnj_G8e-22320610464Transcription factor MYC2
5gnj_I8e-22320610464Transcription factor MYC2
5gnj_M8e-22320610464Transcription factor MYC2
5gnj_N8e-22320610464Transcription factor MYC2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462950678
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960675.11e-150transcription factor bHLH13
SwissprotA0A3Q7ELQ25e-78MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A0A8Y7171e-153A0A0A8Y717_ARUDO; Uncharacterized protein
TrEMBLA0A1E5VMG51e-153A0A1E5VMG5_9POAL; Transcription factor bHLH13
STRINGSi021549m1e-149(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.36e-71bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]