PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462940991
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family G2-like
Protein Properties Length: 203aa    MW: 22139.5 Da    PI: 5.154
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462940991genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.22e-24153202151
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                k +++WtpeLH+rFv+aveqL G++kA+P++ile+m++++Lt+++++SHLQ
  462940991 153 KVKVDWTPELHRRFVQAVEQL-GIDKAVPSRILEIMGIECLTRHNIASHLQ 202
                5689*****************.***************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.248150203IPR017930Myb domain
SuperFamilySSF466897.88E-15151202IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-22151202IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-24153203IPR006447Myb domain, plants
PfamPF002496.8E-6156202IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MLEVVSTVRS PSKVDHHHHN HGGGFEDVFM VDDDNLLDYI DFTSCVDVPS FFDADGDILP  60
DLEVDPTELL AEFDDACPRT STQGEKKEES PAAGGQEKKD IARKKNGDEV SSAVTTEDSA  120
AAAGSDTKSS ASAEGHSKKK KTSSSKNSHG KRKVKVDWTP ELHRRFVQAV EQLGIDKAVP  180
SRILEIMGIE CLTRHNIASH LQV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462940991
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0993092e-89FP099309.1 Phyllostachys edulis cDNA clone: bphyem212o08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967344.14e-71probable transcription factor GLK2
SwissprotQ5NAN51e-61GLK2_ORYSJ; Probable transcription factor GLK2
TrEMBLA0A0A9LLL41e-75A0A0A9LLL4_ARUDO; Uncharacterized protein
STRINGSi001336m1e-70(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.16e-36GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]