PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462933107
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 213aa    MW: 23047 Da    PI: 9.8553
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462933107genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.62.6e-33133191159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK vk+s fprsYYrCt+++C+vkk+v+r a+d+++v++tYeg Hnh+
  462933107 133 LDDGYRWRKYGQKAVKNSAFPRSYYRCTHHTCNVKKQVQRLAKDTSIVVTTYEGVHNHP 191
                59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.7E-34119191IPR003657WRKY domain
SuperFamilySSF1182906.93E-29126192IPR003657WRKY domain
PROSITE profilePS5081128.713128193IPR003657WRKY domain
SMARTSM007747.7E-39133192IPR003657WRKY domain
PfamPF031062.3E-26134191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MENSFPVVAQ RNALLPQLSA FLVSPPAAAP QQQGQQQTCS SNAAVPLSDA GGVSCPPLVD  60
WTSVILPSAS GLQAGTPPQQ TMAEAHVAPG AGEDESGGGS SSKETAKKGG GRRKKKASRP  120
RFAFQTKSEN DILDDGYRWR KYGQKAVKNS AFPRSYYRCT HHTCNVKKQV QRLAKDTSIV  180
VTTYEGVHNH PCEKLMEALA PILRQLQFLS QFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-26123190774Probable WRKY transcription factor 4
2lex_A6e-26123190774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462933107
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8404121e-101DQ840412.1 Hordeum vulgare subsp. vulgare WRKY transcription factor 13 (WRKY13) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160818.11e-76probable WRKY transcription factor 75
SwissprotQ9FFS32e-55WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBLA0A446J9334e-75A0A446J933_TRITD; Uncharacterized protein
TrEMBLA0A452ZM744e-74A0A452ZM74_AEGTS; Uncharacterized protein
STRINGGRMZM2G015433_P014e-73(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.15e-56WRKY DNA-binding protein 24