PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462932360
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family G2-like
Protein Properties Length: 270aa    MW: 30128.8 Da    PI: 9.1782
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462932360genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.31.1e-303992255
    G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
               pr+rWt+eLH++Fveave LGG+++AtPk+il+lm+vkg++++h+kSHLQ+YR+
  462932360 39 PRMRWTEELHRQFVEAVECLGGQDEATPKRILQLMGVKGVSISHIKSHLQMYRS 92
               8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-293593IPR009057Homeodomain-like
PROSITE profilePS5129412.3923595IPR017930Myb domain
TIGRFAMsTIGR015572.3E-243992IPR006447Myb domain, plants
SuperFamilySSF466891.2E-163994IPR009057Homeodomain-like
PfamPF002497.4E-94091IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MCTNLELGRS CEGCRPERRK RMRGFERKGV RQYNRSEVPR MRWTEELHRQ FVEAVECLGG  60
QDEATPKRIL QLMGVKGVSI SHIKSHLQMY RSSSNSSTHQ ASHQKLTSTT ASNSKRVFLN  120
REGRCFYAPH DGNAAADSDK NIYTMLRNCS HASPCQLPSL KEVFSMWEQS RGRVPRHSNV  180
LTTEKAIRPS HTFNKKPEKQ KSCDLTLSIG PWGDASSDAD GSSTISEELA SQPRGESFGS  240
SATGDCFAAV KQESIPALNL DLTMSSSWLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-164093356Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-164093356Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-164093356Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-164093356Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11727RRKRMRGFERK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462932360
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9560373e-89EU956037.1 Zea mays clone 1555999 myb-like DNA-binding domain, SHAQKYF class family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966301.11e-116uncharacterized protein LOC101769616
TrEMBLA0A1E5VP041e-118A0A1E5VP04_9POAL; Uncharacterized protein
STRINGSi007179m1e-116(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54933758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.15e-26G2-like family protein