PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462930525 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | B3 | ||||||||
Protein Properties | Length: 310aa MW: 34278.6 Da PI: 8.8092 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.9 | 1.1e-10 | 21 | 98 | 11 | 98 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++++ l++p + a+e+g + +++ + g++W+v++ +++++ +l++GW+ F++a + g ++v+++ g ++ l+vk+f+ 462930525 21 FSRSTLRIPDELAAEIGAA-----EARIR-SGGKVWSVEV--GQNGDGAFLGRGWRAFADACVVGGGWVLVLRYRG--GGVLTVKAFD 98 567889**********866.....45555.599*******..999999*************************965..7778999987 PP | |||||||
2 | B3 | 47.2 | 4e-15 | 147 | 215 | 19 | 91 |
-HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 19 pkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f +++g+ +++++tl+ s +sW++ +kk+ +++l +GW++F+++n LkegD+++F ++++ + 462930525 147 ATAFSNAIGLREPCTITLKTSMDSTESWQMHGLPWKKR-SFLLVQGWRRFCQENSLKEGDSCIFNVVKT---T 215 5567777799988977777777888*******888886.789999*******************97653...3 PP | |||||||
3 | B3 | 42.6 | 1.1e-13 | 228 | 295 | 17 | 84 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 +l+ f+e++g+ +++++tl+ +s sW+ ++ + ++++ + GW +F+++n++k+gD+++F 462930525 228 YLSQVFCEAIGIREACTITLKTSRSSTMSWQARVLPYDYCSHHIVGPGWTSFCRENRIKVGDVCTFNI 295 67888********99988888888888*******7788888999**********************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.587 | 11 | 100 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.072 | 17 | 100 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-8 | 21 | 98 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.82E-6 | 22 | 98 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 5.0E-10 | 23 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.49E-9 | 24 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-15 | 146 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.659 | 146 | 225 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.85E-15 | 146 | 222 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 6.1E-12 | 150 | 221 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.58E-9 | 154 | 209 | No hit | No description |
SMART | SM01019 | 0.0019 | 211 | 309 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.6E-13 | 227 | 305 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-12 | 228 | 306 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.2E-10 | 228 | 295 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.01E-8 | 233 | 293 | No hit | No description |
PROSITE profile | PS50863 | 9.248 | 244 | 309 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MASSGHPVAA ARKQLRMLLP FSRSTLRIPD ELAAEIGAAE ARIRSGGKVW SVEVGQNGDG 60 AFLGRGWRAF ADACVVGGGW VLVLRYRGGG VLTVKAFDDT ACIRELGAPT TPSGNKDSPF 120 SPKKETKVSI TSGWIELLSC FLLEALATAF SNAIGLREPC TITLKTSMDS TESWQMHGLP 180 WKKRSFLLVQ GWRRFCQENS LKEGDSCIFN VVKTTLWHVV IKHCKEQYLS QVFCEAIGIR 240 EACTITLKTS RSSTMSWQAR VLPYDYCSHH IVGPGWTSFC RENRIKVGDV CTFNIVEPTL 300 WDVVITPRIS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462930525 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2T8KH01 | 3e-62 | A0A2T8KH01_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ga02464.1.p | 2e-50 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31690.1 | 4e-09 | B3 family protein |