PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462929127
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 1165aa    MW: 130178 Da    PI: 8.4538
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462929127genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.94.4e-19179268199
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                ffk++  +    + rl++p kf++++ g    + t++le++sg +++v++    + g+ vl++GW++Fv+ ++L+ gDf+vFk+dg+s    +v +f+ 
  462929127 179 FFKIM--AGD-FRERLTIPQKFVQHFLGT--LTGTIMLESRSGATFDVQV--IYSLGKLVLGSGWEKFVSVHDLNMGDFLVFKYDGSSHL--KVLIFDP 268
                55666..333.4567********555434..4459***************..777778**************************986555..9999985 PP
2B346.18.5e-154425043399
                -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3  33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                s+ ++le++sg +++v++    + g+ vl++GW++Fv+ ++L+ gDf+vFk+dg+s    +v +f+ 
  462929127 442 SRIIMLESRSGATFDVQV--IYSLGKLVLGSGWEKFVSVHDLNMGDFLVFKYDGSSHL--KVLIFDP 504
                5679**************..777778**************************986555..9999985 PP
3B341.42.7e-13630708690
                ..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
         B3   6 tpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                ++ + ++++ + l++ +a+++        + ++ l + +g+ W+v++   k ++r+ l +GWk+F+++n+L+ g++++F+l ++++ 
  462929127 630 SNIYGTARC-MNLSRGYADAYlpF-----EEKVLLLQCNGKNWKVRC--VKVGKRVRLWTGWKRFASDNNLQLGEICLFELLKDKDY 708
                466677777.9999****999431.....336***************..99999999***********************9887665 PP
4B356.55.1e-18742831199
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                ffkv+  +  ++++ +++p +fa++++g  +    +tl+++ g+ W++ +   +  +++v+++GWk+Fv a+ L+egD +vFk+ g s+f   v +f++
  462929127 742 FFKVM--AGGFAQS-ISIPPRFADNFNGHIA--EVVTLKSPGGKIWNIGV--GGDADEVVFRSGWKDFVGAHSLEEGDYLVFKYAGVSSF--DVLIFDS 831
                67777..6666665.9*******88866644..47***************..*********************************99999..8998886 PP
5B341.72e-1398810741299
                 HTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
         B3   12 ksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99  
                 k++++ ++ +fa++++g     ++++l+  +s  +W v ++ +k s++ + ++GW +Fv++ng+ e D+++F++++  ++ +++v+v rk
  462929127  988 KRSLVAVSSEFATKYMGT--LRREIILQRaTSRGTWHVSYNCNKFSRG-LCGRGWCSFVEDNGIVEHDVCLFEVMQGaRRPTMTVHVMRK 1074
                 456778999******887..55689999967779******87777766.7899********************99777999999999987 PP
6B340.16.5e-13107611561899
                 --HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
         B3   18 lpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99  
                 ++ +fa++++g     ++++l+  +s  +W v ++ +k s++ + ++GW +Fv++ng+ e D+++F++++  ++ +++v+v+rk
  462929127 1076 VSSEFATKYMGT--LRREIILQRaTSRGTWHVSYNCNKFSRG-LCGRGWCSFVEDNGIVEHDVCLFEVMQGaRRPTMTVHVLRK 1156
                 6789*****877..55689999967779******87777766.7899********************9977799999**99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-23172271IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-23173271IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.62176269IPR003340B3 DNA binding domain
CDDcd100171.12E-19177267No hitNo description
SMARTSM010191.0E-14179269IPR003340B3 DNA binding domain
PfamPF023622.7E-16179267IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.3E-21377512IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-18382511IPR015300DNA-binding pseudobarrel domain
CDDcd100175.06E-16390503No hitNo description
SMARTSM010193.3E-7391505IPR003340B3 DNA binding domain
PfamPF023621.1E-11442503IPR003340B3 DNA binding domain
PROSITE profilePS5086311.702445505IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-19615714IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.88E-18616706IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.462624716IPR003340B3 DNA binding domain
CDDcd100173.41E-14626706No hitNo description
SMARTSM010199.0E-6627717IPR003340B3 DNA binding domain
PfamPF023624.9E-11635708IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.9E-22737834IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-23738836IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.508739832IPR003340B3 DNA binding domain
CDDcd100173.01E-18740830No hitNo description
SMARTSM010197.6E-13742832IPR003340B3 DNA binding domain
PfamPF023622.2E-15742830IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-189681074IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-169691073IPR015300DNA-binding pseudobarrel domain
CDDcd100172.96E-109731070No hitNo description
SMARTSM010190.019751067IPR003340B3 DNA binding domain
PfamPF023629.2E-119891074IPR003340B3 DNA binding domain
PROSITE profilePS508636.7679921057IPR003340B3 DNA binding domain
PROSITE profilePS508639.61510591157IPR003340B3 DNA binding domain
SMARTSM010190.006810681157IPR003340B3 DNA binding domain
CDDcd100175.27E-710731152No hitNo description
SuperFamilySSF1019364.51E-1210731155IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-1310761155IPR015300DNA-binding pseudobarrel domain
PfamPF023622.5E-1010761156IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1165 aa     Download sequence    Send to blast
MSKSCCEPDV KTTSCVVPTP VVVQIKSPHM VEDVHFDCKS DDLKIGREFD VLVARSNAPS  60
TGIQGVTFSG HLDAMVSFST RCPLRAVVGA RHDICIGCVG GIGVGVGPSP FFRVLSQCPV  120
RTVHRSWEAA PILSPIPSST ELSAPPASGD LLMRKNPEMY EEGGGFYFWG DIDDQDKHFF  180
KIMAGDFRER LTIPQKFVQH FLGTLTGTIM LESRSGATFD VQVIYSLGKL VLGSGWEKFV  240
SVHDLNMGDF LVFKYDGSSH LKVLIFDPSG CEKPPSVVIK KVTHISKRNE PVGMASPYND  300
LSMKSSSNER KRSWAQWDSS KQGNNIIHIG SSSSSPDPSE GATLSEDDQS EHCIPKYIVP  360
FGTCLGSMMK KKLKQKLQAI HSEIPIHVCV IKKSNIYGTA RCMNLSRGYA DAYLPFEEKV  420
LLLQCNGKNW KVRCVKVGKR VSRIIMLESR SGATFDVQVI YSLGKLVLGS GWEKFVSVHD  480
LNMGDFLVFK YDGSSHLKVL IFDPSGCEKP PSVVIKKVTH ISKRNEPVGM ASPYNDLSMK  540
SSSNERKRSW AQWDSSKQGN NIIHIGSSSS SPDPSEGATL SEDDQSEHCI PKYIVPFGTC  600
LGSMMKKKLK QKLQAIHSEI PIHVCVIKKS NIYGTARCMN LSRGYADAYL PFEEKVLLLQ  660
CNGKNWKVRC VKVGKRVRLW TGWKRFASDN NLQLGEICLF ELLKDKDYTM NSMQNSGKNC  720
SVCMEWQEHC YWCHMADEEK HFFKVMAGGF AQSISIPPRF ADNFNGHIAE VVTLKSPGGK  780
IWNIGVGGDA DEVVFRSGWK DFVGAHSLEE GDYLVFKYAG VSSFDVLIFD SSGCEKISPH  840
VANNHGYERI EGPESVEGVR HGCHRFNKGK TSTPQSLPSD DDDDGNAQME VVFPKNTNRK  900
IPKASKRNLS DVIEQSQCEV KDGEDDTELD EDAAPAKTGY YFSKKGPVME YQLTLEEKEE  960
ISSIRVPVQP RNPVFVQVMH PGHVRGKKRS LVAVSSEFAT KYMGTLRREI ILQRATSRGT  1020
WHVSYNCNKF SRGLCGRGWC SFVEDNGIVE HDVCLFEVMQ GARRPTMTVH VMRKAVSSEF  1080
ATKYMGTLRR EIILQRATSR GTWHVSYNCN KFSRGLCGRG WCSFVEDNGI VEHDVCLFEV  1140
MQGARRPTMT VHVLRKVRER FVLLR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1605612KKKLKQKL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462929127
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.18e-37B3 family protein