PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462923136
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 409aa    MW: 44208.6 Da    PI: 7.2676
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462923136genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY26.31.5e-08104124121
                ---SS-EEEEEEE--TT-SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefp 21 
                +dDg++WrKYGqKe+ g+++p
  462923136 104 VDDGHSWRKYGQKEILGAKHP 124
                59*****************99 PP
2WRKY832.9e-26237297158
                ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                +dDg++WrKYGqKe+ g+++pr+YYrC+++   gC+++k+++rs+edp+++++tY g+H++
  462923136 237 VDDGHSWRKYGQKEILGAKHPRAYYRCSHRhshGCTATKQLQRSDEDPTLFDVTYYGTHTC 297
                59***************************98999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-791124IPR003657WRKY domain
SuperFamilySSF1182903.01E-6102124IPR003657WRKY domain
SMARTSM007743.2E-4104143IPR003657WRKY domain
PfamPF031067.9E-6105124IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-26231297IPR003657WRKY domain
PROSITE profilePS5081121.448232295IPR003657WRKY domain
SuperFamilySSF1182907.59E-24235297IPR003657WRKY domain
SMARTSM007741.5E-37237299IPR003657WRKY domain
PfamPF031061.4E-25238297IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MESVDGNNGD SRQVVTQLNH IKDLVMQLET HLGASQDLCK HLASQIFTIT ERSIGLITST  60
NLDIGWKHSN VTDVPFKTTQ KRTMVEKRRH QVRVNSAAAG AMPVDDGHSW RKYGQKEILG  120
AKHPSLDGNG GSRLVVTELS HIKDLVMQLE THLGGSNDLC KHLTSQIFCL TERSIGIITS  180
FDGGRKRSAA DAGLASATPS PLSDVVDVPF KTTKKRKVTE KKNQVRVSSG AGGETPVDDG  240
HSWRKYGQKE ILGAKHPRAY YRCSHRHSHG CTATKQLQRS DEDPTLFDVT YYGTHTCVCT  300
TGTAAGQAKQ TPEHNPDANN LLQNLSAGFT VKTESLAAAM EPFCISSTAA SAPERSLMIS  360
APSTSENWGV SPATSDFEVV TALVAASAPA SAADIIDDFV DIDFSSFFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-22237297868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462923136
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800891.11e-106probable WRKY transcription factor 30
TrEMBLA0A1E5WLZ71e-106A0A1E5WLZ7_9POAL; Putative WRKY transcription factor 53
STRINGPavir.Ba02545.1.p1e-100(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.22e-32WRKY family protein