PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462915240
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 532aa    MW: 59998.7 Da    PI: 9.5642
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462915240genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.21.7e-19118207199
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                ffk++  +    + rl++p kf++++ g    + t++le++sg +++v++    + g+ vl++GW+eFv+ +gL+ gDf+vFk+dg+s    +v +f+ 
  462915240 118 FFKIM--AGD-FRERLTIPQKFVQHFLGT--LTGTIMLESRSGATFDVQV--IYYLGKLVLGSGWEEFVSFHGLNMGDFLVFKYDGSSHL--KVLIFDP 207
                56666..333.4567********555434..4459***************..777788**************************986555..9999985 PP
2B349.76.7e-16445531799
                .-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   7 psdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                + + ++++ + l++ +a+++        + ++ l + +g+ W+v++   k ++r+ l +GWk+F+++n+L+ g++++F+l +++e +++v+++rk
  462915240 445 NIYGTARC-MNLSRGYADAYlpF-----EEKVLLLQCNGKNWKVRC--VKVGKRVRLWTGWKRFASDNNLQLGEICLFELLKDKEYTMNVHIIRK 531
                56666777.999999*9999431.....336***************..99999999************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-24111210IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.79E-24112210IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.422115208IPR003340B3 DNA binding domain
CDDcd100171.23E-20116206No hitNo description
PfamPF023622.0E-16118206IPR003340B3 DNA binding domain
SMARTSM010193.0E-14118208IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.1E-21429531IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-20430531IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.294438532IPR003340B3 DNA binding domain
SMARTSM010191.3E-9441532IPR003340B3 DNA binding domain
CDDcd100178.34E-16441530No hitNo description
PfamPF023627.7E-14449531IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MHGRRSSKSS RTADGATGAR VPEPLRDHRV AAKFYNVKML AKEYWGVSVE AARGNPGSSA  60
MHGSGYMGFT GLGCYRTKNE MIHDMCYASY KMSKNPEMYE ERGGFYFWGD IDDQDKHFFK  120
IMAGDFRERL TIPQKFVQHF LGTLTGTIML ESRSGATFDV QVIYYLGKLV LGSGWEEFVS  180
FHGLNMGDFL VFKYDGSSHL KVLIFDPSGC EKPPSVVIEK VTHISKRNEP VGMASPYNDL  240
SMKASSNERK RSWAQWDSSK QGNNIIHIGS SSSSPDPGTV NHNLLECTFK LQLYHSLWIT  300
IVQKYDGSSH LKVLIFDPSG CEKPPSVVIK KVTHISKRNE PVGMASPYND LSMKSSSNER  360
KRSWAQWDSS KQGNNIIHIG SSSSSPDPSE GATLSEDDQS EHCIPKYIVP FGTCLGSMMK  420
KKLKQKLQAI HSEIPIHVCA IKKSNIYGTA RCMNLSRGYA DAYLPFEEKV LLLQCNGKNW  480
KVRCVKVGKR VRLWTGWKRF ASDNNLQLGE ICLFELLKDK EYTMNVHIIR KR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1419426KKKLKQKL
Cis-element ? help Back to Top
SourceLink
PlantRegMap462915240
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0A9UK532e-92A0A0A9UK53_ARUDO; Uncharacterized protein
STRINGPavir.Ia01267.1.p6e-96(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-16B3 family protein