PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462913648
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 423aa    MW: 48360.2 Da    PI: 9.691
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462913648genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.32.4e-171051861199
                HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                ++++ +++p kf ++ +gk   +k+  l+ +s+++W+v l  +k+ g++++ +GW +F+kan+L+e+Df++F+ +g+  f   v++f++
  462913648 105 FAQS-ISIPEKFGNSLKGKV--NKEFNLKAPSSETWRVSL--TKHAGEMFFMSGWGDFAKANELQENDFLIFTISGNYAF--DVMIFDA 186
                4443.8*******9997774..568***************..*******************************9998888..8888886 PP
2B344.82.3e-14322414699
                ..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
         B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                ++++ +k+++l++p +fa++h  ++ +s ++ l    +  +W v++ + +  +++  +  W +Fv++ngL+   +++F+l++  +++++vv+v+rk
  462913648 322 KTHMGHKNNLLIIPGDFAADHL-ET-RSHDILLLRpNRKDKWCVNYYHGRATRGFSCR-RWIKFVQDNGLRKDFICIFELVKGaKRTTMVVHVVRK 414
                45677788999*******9994.33.44455555527779******555555556555.9********************9887*********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-2191189IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.74794187IPR003340B3 DNA binding domain
CDDcd100178.27E-1696185No hitNo description
Gene3DG3DSA:2.40.330.102.2E-2097189IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.8E-1397187IPR003340B3 DNA binding domain
PfamPF023621.5E-14106186IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.4E-16308413IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-16309413IPR015300DNA-binding pseudobarrel domain
CDDcd100171.47E-13314413No hitNo description
PfamPF023621.1E-12316414IPR003340B3 DNA binding domain
SMARTSM010191.3E-11316415IPR003340B3 DNA binding domain
PROSITE profilePS5086310.814317415IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MDDPSFAHVM PKHQIHRSSV SCGKERCRVI RRIGAPRAAV APPRQRPQRP SSIIANPPWC  60
FCRRPSPWKM AQQGCESCQK WQDHYYQEHM DVSGIRFFKL LTGDFAQSIS IPEKFGNSLK  120
GKVNKEFNLK APSSETWRVS LTKHAGEMFF MSGWGDFAKA NELQENDFLI FTISGNYAFD  180
VMIFDASGCE KVSSFFKGKR DPCMHKHFQN IVGQQAEHCN LSDSNDTSTP LPLIESAYKA  240
SASKKMRGKT KPREEPESPD SSNHHIKREG MGDEEQSDDR HADSIYYYSR SARILTGNER  300
EEILSLASIQ PGNPVFMTVL QKTHMGHKNN LLIIPGDFAA DHLETRSHDI LLLRPNRKDK  360
WCVNYYHGRA TRGFSCRRWI KFVQDNGLRK DFICIFELVK GAKRTTMVVH VVRKVNGRFI  420
MAG
Cis-element ? help Back to Top
SourceLink
PlantRegMap462913648
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808341.11e-176B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT21e-146Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A0A9E2X80.0A0A0A9E2X8_ARUDO; Uncharacterized protein
STRINGPavir.Ca02695.1.p1e-177(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.19e-32B3 family protein