PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462909549
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 229aa    MW: 25007.3 Da    PI: 8.4174
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462909549genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.93.6e-32151209159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+ver +ed ++v++tYeg+H+h+
  462909549 151 LDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHTHT 209
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-33136209IPR003657WRKY domain
SuperFamilySSF1182901.96E-28143209IPR003657WRKY domain
PROSITE profilePS5081128.92146208IPR003657WRKY domain
SMARTSM007741.4E-37151210IPR003657WRKY domain
PfamPF031063.9E-25152208IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MEGSSQLETC FPSLYGLSPC APPLAPLPNQ NKLLQMPLVQ EHVGNHGVML SSDHHSGLYP  60
LLLPGIPFCP SSAAAGDKPS GFATLDAVEA SNSAAKAAGE IASSTATTCH GSSSWWKGPA  120
MATEKGRAMK VRRKMREPRF CFQTRSDVDV LDDGYKWRKY GQKVVKNSLH PRSYYRCTHS  180
NCRVKKRVER LSEDCRMVIT TYEGRHTHTP CSDDGDGSDH TGSCAFTSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-25142208874Probable WRKY transcription factor 4
2lex_A8e-25142208874Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462909549
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6654321e-127EU665432.1 Triticum aestivum WRKY3 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825009.11e-130probable WRKY transcription factor 12
TrEMBLA0A2S3I8X21e-129A0A2S3I8X2_9POAL; Uncharacterized protein
STRINGPavir.Gb01200.1.p1e-120(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.13e-58WRKY family protein