PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462906072

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

G2-like

Protein Properties

Length: 424aa MW: 45209.8 Da PI: 5.8771

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462906072	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	89.2	3.7e-28	188	242	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k++++WtpeLH+rFv+aveqL G++kA+P++ile+m++++Lt+++v+SHLQkYR++ 462906072 188 KAKVDWTPELHRRFVQAVEQL-GIDKAVPSRILEIMGIDSLTRHNVASHLQKYRSH 242 6799***************.******************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.827	185	244	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.6E-28	186	245	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.85E-19	186	245	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-26	188	242	IPR006447	Myb domain, plants
Pfam	PF00249	5.7E-8	191	240	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010638	Biological Process	positive regulation of organelle organization
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MLAVSPAGCA GLEERAGGAA GVVGMEADAI GAVSDLDFDF SVDDIDFGDF FLRLEDGDAL 60 PDLEVDPADI FTEFEEIATG GNGVTDQEVP SVHNPSPDGA HVADVVDPCT GVLGEENPSL 120 ADAQAEGKGE CNLADEAVAG NNGDFAGGGC AAAAAAVEEK STSSTTSSSQ EAESRHKSSS 180 KSSHGKKKAK VDWTPELHRR FVQAVEQLGI DKAVPSRILE IMGIDSLTRH NVASHLQKYR 240 SHRKHMLARE AEAASWTQRR QMYATGGSAT AVKRPAEPNA WTVPTIGFPP PPPAPPSHPM 300 QHFARPLHVW GHPTPTVDSP RVPMWPRHLV PRTPTPPWAP PPPPADPAFW HHHAYMRGPG 360 HMPSQVMAMP MPAARFPAPP VRGVLPPCPA PLYRPLVPPT LANKTQQDTQ LQLHTQPVSV 420 LLTT

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MLAVSPAGCA GLEERAGGAA GVVGMEADAI GAVSDLDFDF SVDDIDFGDF FLRLEDGDAL  60
PDLEVDPADI FTEFEEIATG GNGVTDQEVP SVHNPSPDGA HVADVVDPCT GVLGEENPSL  120
ADAQAEGKGE CNLADEAVAG NNGDFAGGGC AAAAAAVEEK STSSTTSSSQ EAESRHKSSS  180
KSSHGKKKAK VDWTPELHRR FVQAVEQLGI DKAVPSRILE IMGIDSLTRH NVASHLQKYR  240
SHRKHMLARE AEAASWTQRR QMYATGGSAT AVKRPAEPNA WTVPTIGFPP PPPAPPSHPM  300
QHFARPLHVW GHPTPTVDSP RVPMWPRHLV PRTPTPPWAP PPPPADPAFW HHHAYMRGPG  360
HMPSQVMAMP MPAARFPAPP VRGVLPPCPA PLYRPLVPPT LANKTQQDTQ LQLHTQPVSV  420
LLTT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	6e-17	185	240	2	57	ARR10-B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. {ECO:0000269\|PubMed:19808806}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462906072

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. {ECO:0000269\|PubMed:11340194}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812542.1	0.0	probable transcription factor GLK1
Swissprot	Q5Z5I4	1e-145	GLK1_ORYSJ; Probable transcription factor GLK1
TrEMBL	A0A1E5VSE8	0.0	A0A1E5VSE8_9POAL; Putative transcription factor GLK1
STRING	Si006400m	1e-177	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2415	38	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20570.1	1e-43	GBF's pro-rich region-interacting factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang Y, et al. A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes. Plant Methods, 2011. 7(1): p. 30 [PMID:21961694]