PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462896788

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bZIP

Protein Properties

Length: 376aa MW: 40510.2 Da PI: 4.9061

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462896788	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.6	1.6e-09	96	143	4	51
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 + r r+ NReA r++R++Kka + Lee+vk+L a N++L +l++ 462896788 96 STRPRKPLGNREAVRKYREKKKAHAAFLEEEVKKLRATNQQLLRRLQS 143 567788899*********************************988875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.3E-15	91	161	No hit	No description
SMART	SM00338	1.7E-8	92	160	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	2.4E-12	95	150	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.818	95	161	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.06E-7	99	145	No hit	No description
CDD	cd14686	3.66E-12	100	151	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MLPSFSFAVE EKIVLGTFSV PMDGGGADLP CQYLFSHPEM PDSFDEFLNS ATTTCFHTHS 60 CNPPGTSAAA HTHTCLHTHT QVFAGGGEDD DAREDSTRPR KPLGNREAVR KYREKKKAHA 120 AFLEEEVKKL RATNQQLLRR LQSHAALEAE VVRLRSLLLD VRGKIDAEVA AFPFPKQCSV 180 GSVVSADQTL CFNGNSEVGG GAWDESCRPE AADFGIDEGG GVSREIGISE AVHSMDTVAG 240 FCVQNTLYSM SENVDNASTE FRLKLRATNQ QLLRRLQSHA ALEAEVVRLR SLLLDVRGKI 300 DAEVAAFPFP KQCSVGSVVS ADQTLCFNGN SEVGGGAWDE SCRPEAADFG IDEGGGVSRE 360 IGISEAVHSM DAVAGF

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MLPSFSFAVE EKIVLGTFSV PMDGGGADLP CQYLFSHPEM PDSFDEFLNS ATTTCFHTHS  60
CNPPGTSAAA HTHTCLHTHT QVFAGGGEDD DAREDSTRPR KPLGNREAVR KYREKKKAHA  120
AFLEEEVKKL RATNQQLLRR LQSHAALEAE VVRLRSLLLD VRGKIDAEVA AFPFPKQCSV  180
GSVVSADQTL CFNGNSEVGG GAWDESCRPE AADFGIDEGG GVSREIGISE AVHSMDTVAG  240
FCVQNTLYSM SENVDNASTE FRLKLRATNQ QLLRRLQSHA ALEAEVVRLR SLLLDVRGKI  300
DAEVAAFPFP KQCSVGSVVS ADQTLCFNGN SEVGGGAWDE SCRPEAADFG IDEGGGVSRE  360
IGISEAVHSM DAVAGF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462896788

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001142351.1	1e-104	uncharacterized protein LOC100274522
Refseq	XP_020394445.1	1e-104	putative bZIP transcription factor superfamily protein isoform X1
Refseq	XP_020394446.1	1e-104	putative bZIP transcription factor superfamily protein isoform X1
Refseq	XP_020394447.1	1e-104	putative bZIP transcription factor superfamily protein isoform X1
Refseq	XP_020394448.1	1e-104	putative bZIP transcription factor superfamily protein isoform X1
Refseq	XP_020394449.1	1e-104	putative bZIP transcription factor superfamily protein isoform X1
Swissprot	Q8GTS2	1e-46	BZP23_ARATH; Basic leucine zipper 23
TrEMBL	A0A0A9S3G7	1e-109	A0A0A9S3G7_ARUDO; Uncharacterized protein
STRING	GRMZM2G175870_P01	1e-103	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3831	36	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16770.1	5e-29	bZIP family protein

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]