PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462894080

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Protein Properties

Length: 1082aa MW: 122614 Da PI: 8.9662

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462894080	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	30.6	5.9e-10	435	520	9	98
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 +++k++ l +p + + e ++ + + + led++g++ +v+l + +g+ + +GW++F++++ +k g+f++F+ + + ++ ++v++f 462894080 435 NNFKES-LLIPPEVVPELEHLT--NHHVYLEDSEGKVSKVRL--SVVDGSLAFDQGWNNFASDHLIKWGEFLLFECSAEsTSDYFFVRIFG 520 455555.899999998887664..457*************..9999999**********************9877677777888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.0E-12	425	521	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.08E-14	426	522	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.264	426	522	IPR003340	B3 DNA binding domain
CDD	cd10017	2.91E-8	428	519	No hit	No description
Pfam	PF02362	7.5E-8	431	520	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1082 aa Download sequence Send to blast
MQIVEGKVKN INTPPVFLEK EKEKERKRPN NDNCEKNTRT DKEGVKNKRN DNYKEGEKNR 60 RTDKCKEGDK SKRTDSYREG KKKISNEVNN GKASLTSFDK EKRKEKLKIS CSKKNMQTED 120 VMEEVVENWN DHSKLNSRKV SCKREKIRKR SNNSNCGKKI HGNGDEREET NMWNCDFKVK 180 DEEVSAAFSE NEKNKKRPTS TNREKKKLQS DVKGTQKQMR DLDSKMRNEE SSAAFFEKEH 240 EQKRPHSTNS QKKVQRDDKK CENNMQNGHY KVKDRRVSTT SFEKDKKRKM SSSDKVEKKM 300 NGAYMGTPLS VSKNKMRRND GRKKTEPITS AAKEKKRRPD GSTEKNAPHD SKEKKRNVPS 360 DFKEGKMMVP TDSNNKKRKR EEPHAVFKKE KRMQSDDNEK KIRSGNRNGK EKKNYGSGEK 420 KKRNTPLSFF KVIFNNFKES LLIPPEVVPE LEHLTNHHVY LEDSEGKVSK VRLSVVDGSL 480 AFDQGWNNFA SDHLIKWGEF LLFECSAEST SDYFFVRIFG RDSRERLHFD VGRKKEGARK 540 KKIHTNTHGD LMSLEVKLED TEGDCIFSGE YTGRKDPETH HVTVQTKEDP KRVECMVGSG 600 PVPLDNMNGN EVIQQCRTQG MSPICSKREI LIVDSEPLIH ENNIARLTTS TADSNTQHMP 660 AHTNEDLRRI HSGTGNGQST VIDDEKGILP GVECGTKSTS PKCGIKRVAS VDAAPLTHEN 720 DYMSKHDLKL HDSGEDLRWK QEISSIHLEC TTAANKYNNH GEMNISRDVC RKYEAPGGFR 780 CLEKWKSRIV SFRSVLDDTE LFKPESTRKT DSQPVLAVEY DAVGLNNGDK CFLSKDTHAC 840 SQPVLTMPVK DPSSPDGVTK CEQDGTEINH SINGEGTSVV QLQTKKEQLE TLGSILNGPG 900 DNNLSCANLI VVCNSGPVEL NPARSEGTFA LIESQPTVHI KSPSCPDRIC NFGSSRTEVN 960 DNVDGEAKLE AKMGHLEPMD TVGSQSTDIP VCANNVAARQ SDHCVFKQED KNSIDFFTHV 1020 KTEILTPVKP EILEPDERSL LKINLQFCIP NSTQKLLLSA STCLHGTALQ RYTKLCGNHD 1080 FS

Sequence ? help Back to Top

Protein Sequence Length: 1082 aa Download sequence Send to blast

MQIVEGKVKN INTPPVFLEK EKEKERKRPN NDNCEKNTRT DKEGVKNKRN DNYKEGEKNR  60
RTDKCKEGDK SKRTDSYREG KKKISNEVNN GKASLTSFDK EKRKEKLKIS CSKKNMQTED  120
VMEEVVENWN DHSKLNSRKV SCKREKIRKR SNNSNCGKKI HGNGDEREET NMWNCDFKVK  180
DEEVSAAFSE NEKNKKRPTS TNREKKKLQS DVKGTQKQMR DLDSKMRNEE SSAAFFEKEH  240
EQKRPHSTNS QKKVQRDDKK CENNMQNGHY KVKDRRVSTT SFEKDKKRKM SSSDKVEKKM  300
NGAYMGTPLS VSKNKMRRND GRKKTEPITS AAKEKKRRPD GSTEKNAPHD SKEKKRNVPS  360
DFKEGKMMVP TDSNNKKRKR EEPHAVFKKE KRMQSDDNEK KIRSGNRNGK EKKNYGSGEK  420
KKRNTPLSFF KVIFNNFKES LLIPPEVVPE LEHLTNHHVY LEDSEGKVSK VRLSVVDGSL  480
AFDQGWNNFA SDHLIKWGEF LLFECSAEST SDYFFVRIFG RDSRERLHFD VGRKKEGARK  540
KKIHTNTHGD LMSLEVKLED TEGDCIFSGE YTGRKDPETH HVTVQTKEDP KRVECMVGSG  600
PVPLDNMNGN EVIQQCRTQG MSPICSKREI LIVDSEPLIH ENNIARLTTS TADSNTQHMP  660
AHTNEDLRRI HSGTGNGQST VIDDEKGILP GVECGTKSTS PKCGIKRVAS VDAAPLTHEN  720
DYMSKHDLKL HDSGEDLRWK QEISSIHLEC TTAANKYNNH GEMNISRDVC RKYEAPGGFR  780
CLEKWKSRIV SFRSVLDDTE LFKPESTRKT DSQPVLAVEY DAVGLNNGDK CFLSKDTHAC  840
SQPVLTMPVK DPSSPDGVTK CEQDGTEINH SINGEGTSVV QLQTKKEQLE TLGSILNGPG  900
DNNLSCANLI VVCNSGPVEL NPARSEGTFA LIESQPTVHI KSPSCPDRIC NFGSSRTEVN  960
DNVDGEAKLE AKMGHLEPMD TVGSQSTDIP VCANNVAARQ SDHCVFKQED KNSIDFFTHV  1020
KTEILTPVKP EILEPDERSL LKINLQFCIP NSTQKLLLSA STCLHGTALQ RYTKLCGNHD  1080
FS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	312	323	KNKMRRNDGRKK
2	321	337	RKKTEPITSAAKEKKRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462894080

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12272	27	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66980.1	1e-07	B3 family protein