PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462893214 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | G2-like | ||||||||
Protein Properties | Length: 492aa MW: 52519.2 Da PI: 6.3413 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.5 | 1.3e-27 | 262 | 316 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k++++WtpeLH+rFv+aveqL G++kA+P++ile+m++++Lt+++++SHLQkYR++ 462893214 262 KAKVDWTPELHRRFVQAVEQL-GIDKAVPSRILEIMGIDSLTRHNIASHLQKYRSH 316 6799*****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.924 | 259 | 318 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.53E-19 | 260 | 319 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.4E-27 | 260 | 319 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-26 | 262 | 316 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.0E-8 | 265 | 314 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 492 aa Download sequence Send to blast |
MPPPSSPNTP RRVQKSCQCT NWSLLSTSLF HGSSSSSNLA KGSVTTTYPN AILLALQFSC 60 ELLLVHPPSS RVHLALVAKV PEMLAVSPAG CAGLEERAGG AAGVVGMEGD ALGAVSDLDF 120 DFSVDDIDFG DFFLRLEDGD ALPDLEVDPA DIFTEFEEIA TGGNGVTDQE VPSVHNPSPD 180 GAHVAVVVDP CTGVLGEENP SLVAAPAEGK GECNLADEAA AGRNGEVAAA VEEKSTSSTT 240 SSSQEAESRH KSSSNSSHGK KKAKVDWTPE LHRRFVQAVE QLGIDKAVPS RILEIMGIDS 300 LTRHNIASHL QKYRSHRKHM LAREAEAASW TQRRQMYATG GSATAVKRPD PNAWTHFARP 360 LHVWGHPTPT VDSPRVPMWP RHLVPRTPTP PWAPPPADPA FWHHHPYMRG PGHMPSQVMA 420 MPMPTAISRA TCKRSFAAMS SPISNESIDA AIGDVLTKPW LPLPLGLKPP SVDSVMGELQ 480 RQGVGNVPPA CG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-16 | 259 | 314 | 2 | 57 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. {ECO:0000269|PubMed:19808806}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00022 | PBM | Transfer from AT2G20570 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462893214 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:11340194}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK061946 | 3e-93 | AK061946.1 Oryza sativa Japonica Group cDNA clone:001-042-E04, full insert sequence. | |||
GenBank | AK065184 | 3e-93 | AK065184.1 Oryza sativa Japonica Group cDNA clone:J013002D22, full insert sequence. | |||
GenBank | AK098909 | 3e-93 | AK098909.1 Oryza sativa Japonica Group cDNA clone:J013002F22, full insert sequence. | |||
GenBank | AK098915 | 3e-93 | AK098915.1 Oryza sativa Japonica Group cDNA clone:J013002I19, full insert sequence. | |||
GenBank | AK122161 | 3e-93 | AK122161.1 Oryza sativa Japonica Group cDNA clone:J033147G01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812542.1 | 1e-160 | probable transcription factor GLK1 | ||||
Swissprot | Q5Z5I4 | 1e-143 | GLK1_ORYSJ; Probable transcription factor GLK1 | ||||
TrEMBL | A0A1E5VSE8 | 1e-175 | A0A1E5VSE8_9POAL; Putative transcription factor GLK1 | ||||
STRING | Si006400m | 1e-156 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2415 | 38 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44190.1 | 2e-52 | GOLDEN2-like 2 |
Publications ? help Back to Top | |||
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