PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462892839
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 286aa    MW: 31154.7 Da    PI: 8.2646
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462892839genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.43.1e-10328127
               --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
               +kt+lC+ f++ GtC+y  +C+FaHg+
  462892839  3 FKTKLCCKFRA-GTCPYVTNCNFAHGM 28
               69*********.*************95 PP
2zf-CCCH18.63.4e-0678103126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                yk + C+ f+    C+yGd C+F H+
  462892839  78 YKGRHCKKFYTEEGCPYGDACTFLHD 103
                78888********************7 PP
3zf-CCCH43.84.2e-14141166126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +kt++C+ +  tG+C++G++C+FaHg
  462892839 141 WKTRICNKWEMTGYCPFGSKCHFAHG 166
                8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.2E-14235IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.028229IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-7233IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014228IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-7328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-977105IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-777105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.62977105IPR000571Zinc finger, CCCH-type
SMARTSM003560.377104IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-18134170IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-10137171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422140168IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-9140167IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-11141166IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MFFKTKLCCK FRAGTCPYVT NCNFAHGMEE LRKPPPNWQE IVAAHDESTE QREEHQIPIM  60
TSVVAGDGGG SSQGGRAYKG RHCKKFYTEE GCPYGDACTF LHDEQSKARE SVAISLSPSV  120
GGGGYNAASA NGVQVPKPSN WKTRICNKWE MTGYCPFGSK CHFAHGAAEL HKYGGGLVDL  180
DNNTASTPDS KQAGGSAKIP ADATAASNAV PPHADVYHLG IQSQRATIGS QRSGQVQRPI  240
QKWKGPDKIS RIYGDWIDEN EERLDRQSKK HLRIQKAKAA DAQDAD
Cis-element ? help Back to Top
SourceLink
PlantRegMap462892839
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131826.11e-166uncharacterized LOC100193200
RefseqXP_008661405.11e-166uncharacterized protein LOC100193200 isoform X2
RefseqXP_021321178.11e-165zinc finger CCCH domain-containing protein 56 isoform X2
SwissprotQ84UQ31e-143C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A1D6J0191e-166A0A1D6J019_MAIZE; Zinc finger CCCH domain-containing protein 12
STRINGGRMZM2G305582_P021e-163(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66153853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.13e-98C3H family protein