PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462887325 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C3H | ||||||||
Protein Properties | Length: 700aa MW: 78593.7 Da PI: 7.6713 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22 | 2.8e-07 | 102 | 123 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ G C+yG++C +Hg 462887325 102 PICS-FAAAGNCPYGESCLQMHG 123 6788.*****************9 PP | |||||||
2 | zf-CCCH | 27.4 | 5.9e-09 | 339 | 359 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+++ G C+yG+rC++ H+ 462887325 339 VCTFYQK-GACSYGSRCRYDHV 359 5******.*************7 PP | |||||||
3 | zf-CCCH | 22 | 2.8e-07 | 457 | 478 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ G C+yG++C +Hg 462887325 457 PICS-FAAAGNCPYGESCLQMHG 478 6788.*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.136 | 98 | 125 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0025 | 99 | 124 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 1.79E-11 | 156 | 231 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 1.1E-9 | 160 | 226 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 0.00104 | 166 | 226 | No hit | No description |
SMART | SM00184 | 2.5E-7 | 167 | 224 | IPR001841 | Zinc finger, RING-type |
Pfam | PF00097 | 4.0E-7 | 167 | 224 | IPR018957 | Zinc finger, C3HC4 RING-type |
PROSITE profile | PS50089 | 12.224 | 167 | 225 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 191 | 200 | IPR017907 | Zinc finger, RING-type, conserved site |
SMART | SM00356 | 0.011 | 254 | 282 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.676 | 254 | 283 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.896 | 306 | 333 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-4 | 307 | 332 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.27E-6 | 308 | 331 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.277 | 334 | 361 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.4E-4 | 336 | 360 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.0E-4 | 339 | 358 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-6 | 339 | 359 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.136 | 453 | 480 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0025 | 454 | 479 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 1.79E-11 | 511 | 586 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 1.1E-9 | 515 | 581 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 0.00104 | 521 | 581 | No hit | No description |
SMART | SM00184 | 2.5E-7 | 522 | 579 | IPR001841 | Zinc finger, RING-type |
Pfam | PF00097 | 4.0E-7 | 522 | 579 | IPR018957 | Zinc finger, C3HC4 RING-type |
PROSITE profile | PS50089 | 12.224 | 522 | 580 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 546 | 555 | IPR017907 | Zinc finger, RING-type, conserved site |
PROSITE profile | PS50103 | 13.676 | 609 | 638 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.011 | 609 | 637 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 700 aa Download sequence Send to blast |
MSTKRYDHVK VSRNPTVMPP PPSSSSTRRV ASTSLQLLGS SHPPHTVHQT DTSNETQQVS 60 HSASKPAWRN DFLKASAAED GIDWSSNPTE QNQTSMRPAD LPICSFAAAG NCPYGESCLQ 120 MHGDLCTTCG KMCLHPYRPD EREEHIKLCE KNHKRLEALK RSQEIECSVC LDRVLSKPTA 180 AERKFGLLSE CDHPFCIACI RNWRNNSPSS GMDVNSALRA CPICRKLSYY VIPSVLWYFS 240 KEEKQEITES YKSKLKSIDC KYFDFGTGSC PFGTSCFYRH AYRDGRLEEV VLRHLDADDG 300 STVIAKNIRV LCKFYMHGAC LKGEYCEFSH DWSDQANNVC TFYQKGACSY GSRCRYDHVK 360 VSRNPTVMPP PPSSSSARRV ASTSLQLLGS SHPPHMVHQT DTSNETQQVP MNMLAHSASK 420 PAWRNDFLKA SAAEDGIDWS SNPTEQNQTS MRPADLPICS FAAAGNCPYG ESCLQMHGDL 480 CTTCGKMCLH PYRPDEREEH IKLCEKNHKR LEALKRSQEI ECSVCLDRVL SKPTAAERKF 540 GLLSECDHPF CIACIRNWRN NSPSSGMDVN SALRACPICR KLSYYVIPSV LWYFSKEEKQ 600 EITESYKSKL KSIDCKYFDF GTGSCPFGTS CFYRHAYRDG RLEEVVLRHL DADDGSTTIG 660 LPQSDASLGT SSCTYIKYSD DQLRVANFLD QSLTRPSCGM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462887325 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP094356 | 0.0 | FP094356.1 Phyllostachys edulis cDNA clone: bphyem202c13, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004965338.1 | 0.0 | E3 ubiquitin-protein ligase makorin | ||||
Swissprot | Q5ZA07 | 0.0 | C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin | ||||
TrEMBL | K3XXQ2 | 0.0 | K3XXQ2_SETIT; Uncharacterized protein | ||||
STRING | Si006712m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5326 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-135 | C3H family protein |
Publications ? help Back to Top | |||
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