PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462887068

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bZIP

Protein Properties

Length: 320aa MW: 33684 Da PI: 11.1162

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462887068	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.2	3.6e-13	240	293	4	57
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 ++r++r++kNRe+A rsR RK+a+++eLe v +Le+e +L e ee +++ 462887068 240 VQRQKRMIKNRESAARSRDRKQAYVAELESQVSQLEEEQAELLREQEEQNQKRL 293 58**************************************99987776665544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.6E-8	237	301	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.611	239	291	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.6E-11	240	292	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.69E-10	241	290	No hit	No description
CDD	cd14707	3.48E-18	241	288	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.2E-12	242	295	No hit	No description
PROSITE pattern	PS00036	0	244	259	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
GLLSSPRSAS PRVESVGGCF AALLPPPSLA SSTNQPQHFL PRSSLSPSPE THRRSNGAPR 60 GAVKAARRGA AHLATSRGAV SGVAAWPVVA GDAVVVVAAA AGGRGVRGPR ALQEQQRHRI 120 HEHGRHHAQH LRDPAPAAAA RRTSEEVWKE ISAAGGGGVL TAPAPPPPPA ATGAGAGGAG 180 GASEMTLEDF LARDTGTAIV PVVEASMALG FPDGGDVAPV GGGGRARKRA PMDPMDRAVV 240 QRQKRMIKNR ESAARSRDRK QAYVAELESQ VSQLEEEQAE LLREQEEQNQ KRLKELMEKA 300 VPAIRSKPLQ DLRRTNSMEW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00648	PBM	Transfer from LOC_Os05g36160	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462887068

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001149687.1	9e-67	uncharacterized protein LOC100283313
Swissprot	Q0JHF1	3e-51	BZP12_ORYSJ; bZIP transcription factor 12
TrEMBL	B6TGZ0	2e-65	B6TGZ0_MAIZE; G-box-binding factor 4
STRING	GRMZM2G132868_P01	4e-66	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2665	37	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44080.1	2e-11	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]