PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462885415
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family CAMTA
Protein Properties Length: 1715aa    MW: 190368 Da    PI: 5.4824
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462885415genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1180.32.4e-56211372118
       CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101
                l+ ++rwl+++ei++iL n++k++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+een++fqrr+ywl
  462885415  21 LEAQNRWLRPTEICQILSNYKKFSIAPEPPNRPPSGSLFLFDRKILRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENSNFQRRTYWL 120
                5679************************************************************************************************ PP

       CG-1 102 Leeelekivlvhylevk 118
                Lee + +ivlvhylevk
  462885415 121 LEEGFMNIVLVHYLEVK 137
                **************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.80316142IPR005559CG-1 DNA-binding domain
SMARTSM010763.2E-7619137IPR005559CG-1 DNA-binding domain
PfamPF038592.1E-5022136IPR005559CG-1 DNA-binding domain
PfamPF018335.2E-4408481IPR002909IPT domain
SuperFamilySSF812967.56E-15408494IPR014756Immunoglobulin E-set
PfamPF018335.2E-4807880IPR002909IPT domain
SuperFamilySSF812967.56E-15807893IPR014756Immunoglobulin E-set
SuperFamilySSF484031.28E-279871102IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.8E-349941099IPR020683Ankyrin repeat-containing domain
CDDcd002046.68E-149981096No hitNo description
PROSITE profilePS5029717.34310041098IPR020683Ankyrin repeat-containing domain
PfamPF127968.2E-810101099IPR020683Ankyrin repeat-containing domain
SMARTSM002480.02210371069IPR002110Ankyrin repeat
PROSITE profilePS500889.61810371069IPR002110Ankyrin repeat
SMARTSM0024846010761105IPR002110Ankyrin repeat
CDDcd002046.49E-1412021336No hitNo description
SMARTSM000150.09412111233IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.82812121241IPR000048IQ motif, EF-hand binding site
PfamPF006120.009812131232IPR000048IQ motif, EF-hand binding site
Gene3DG3DSA:1.25.40.206.8E-3412361339IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.28E-2712401336IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.34312441338IPR020683Ankyrin repeat-containing domain
PfamPF127968.2E-812501339IPR020683Ankyrin repeat-containing domain
SMARTSM002480.02212771309IPR002110Ankyrin repeat
PROSITE profilePS500889.61812771309IPR002110Ankyrin repeat
SMARTSM0024846013161345IPR002110Ankyrin repeat
SMARTSM000150.09414511473IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.82814521481IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525402.07E-714521502IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006120.009814531472IPR000048IQ motif, EF-hand binding site
SMARTSM000150.01114741496IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.35914751499IPR000048IQ motif, EF-hand binding site
PfamPF006124.6E-414771496IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1715 aa     Download sequence    Send to blast
MAEIRKYPMS NQPPDIPQIL LEAQNRWLRP TEICQILSNY KKFSIAPEPP NRPPSGSLFL  60
FDRKILRYFR KDGHNWRKKK DGKTVKEAHE KLKVGSVDVL HCYYAHGEEN SNFQRRTYWL  120
LEEGFMNIVL VHYLEVKGGK ENFSRAKEAE EIAGLSNADS PACSNSFASQ SQVASQTMDA  180
ESPISGQISE YEDAETGYLG HMQPSTANLN NHFVSRKDIS SVFNGSGAGL RGISNTPLSS  240
LDSVQFGEPF PEYGSGFMEP TLYSSVATME SNNLDDSSHL QTFESEALYT SNLTQKEADA  300
LSAAGISSSQ AENDSYTDRS VRYPLLKQSS LDLFKMEPDG LKKFDSFSRW MSSELAEVVD  360
LDIKSSSDAF WSTTETVNAA DGSSVPINEQ LEAFVVSPSL SQDQLFSIID VSPSWAYAGS  420
KSKVLITGTF LANKEDVEKC RWSCMFGDVE VPAEVLVDGS LRSYTPVHHA GRVPFYVTCS  480
NRVACSEVRE FEFRDSETQY MEDSDQHTTG VNEMHLHIRL EKLLSLGPDD YEKYVLSSGN  540
KSELIDTINS LMLDDRFSNL ALPSDEKFST VRDQNLEKLV KEKLYYWLIH KVHDDGYLGH  600
MQPSTANLNN HFVSRKDISS VFNGSGAGLR GISNTPLSSL DSVQFGEPFP EYASGFMEPT  660
LYSSVATMES NNLDDSSHLQ TFESEALYTS NLTQKEADAL SAAGISSSQA ENDSYTDRSV  720
RYPLLKQSSL DLFKMEPDGL KKFDSFSRWM SSELAEVVDL DIKSSSDAFW STTETVNAAD  780
GSSVPINEQL EAFVVSPSLS QDQLFSIIDV SPSWAYAGSK SKVLITGTFL ANKEDVEKCR  840
WSCMFGDVEV PAEVLVDGSL RSYTPVHHAG RVPFYVTCSN RVACSEVREF EFRDSETQYM  900
EDSDQHTTGV NEMHLHIRLE KLLSLGPDDY EKYVLSSGNK SELIDTINSL MLDDRFSNLA  960
LPSDEKFSTV RDQNLEKLVK EKLYYWLIHK VHDDGKGPNV LGKEGQGVIH LVAALGYDWA  1020
IRPIVAAGVN VNFRDIRGWT ALHWAASCGR ESTVSALIAN GAASGALTDP TQQFPSGRTA  1080
ADLASENGHK GIAGFLAESA LTSHLSALSL KESQAGNVEE ICGSAAAADF AESSSDQLAC  1140
VDSEAEPLKD SLSAVRKSTQ AAARIFQAFR VESFHRKKVI EYGDDDCGLS DERTLSLVSL  1200
KNARPGQGDV PLHSAAVRIQ NKFRGWKGRK EFMIIRQKIV KIQEGQGVIH LVAALGYDWA  1260
IRPIVAAGVN VNFRDIRGWT ALHWAASCGR ESTVSALIAN GAASGALTDP TQQFPSGRTA  1320
ADLASENGHK GIAGFLAESA LTSHLSALSL KESQAGNVEE ICGSAAAADF AESSSDQLAC  1380
VDSEAEPLKD SLSAVRKSTQ AAARIFQAFR VESFHRKKVI EYGDDDCGLS DERTLSLVSL  1440
KNARPGQGDV PLHSAAVRIQ NKFRGWKGRK EFMIIRQKIV KIQAHVRGHQ VRKSFRKIVW  1500
SVGIVEKVIL RWRRKRRGLR GFQAEKQLEG PSQIQPAGVD QPARVEDEYD FLKDGRKQAE  1560
RRLQIALDRV HSMTRYPEAT EQYHRLRTRV NELQESQEMQ DRMLSDSAGA DGSDFMAELE  1620
EICRDDGDTP IVLLECPWVF KFNLDSNTFD YVKIVASTTT FIPWAFRARE FCTWVFKLTT  1680
INEYQTSKAA HVIPEKSTKP KRPKHPSSLP KPPLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lec_A1e-13988136136485DDD_D12_12_D12_12_D12
5led_A1e-13988136136485DDD_D12_12_D12_12_D12
5lee_A1e-13988136136485DDD_D12_12_D12_12_D12
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462885415
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800735.10.0calmodulin-binding transcription activator 3-like
TrEMBLA0A2T7EYS20.0A0A2T7EYS2_9POAL; Uncharacterized protein
STRINGPavir.Ba00386.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.11e-139ethylene induced calmodulin binding protein