PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462879102 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C3H | ||||||||
Protein Properties | Length: 181aa MW: 20476.1 Da PI: 7.7394 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.6 | 3.3e-06 | 4 | 25 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lC+f++ G C G+ C F+H+ 462879102 4 VLCKFYMH-GACLKGEYCEFSHD 25 69**8888.*************5 PP | |||||||
2 | zf-CCCH | 29.7 | 1.1e-09 | 33 | 53 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+++ G C+yG+rC++ H+ 462879102 33 VCTFYQK-GACSYGSRCRYDHV 53 5******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.9E-4 | 1 | 26 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.67E-7 | 4 | 25 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.305 | 5 | 27 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF15663 | 4.0E-8 | 6 | 60 | No hit | No description |
PROSITE profile | PS50103 | 14.277 | 28 | 55 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.4E-4 | 30 | 54 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 30 | 52 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.2E-5 | 33 | 52 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.23 | 117 | 144 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.324 | 121 | 145 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MDGVLCKFYM HGACLKGEYC EFSHDWSDQA NNVCTFYQKG ACSYGSRCRY DHVKVSRNPT 60 VMPPPPSSSS ARRVASTSLQ LLGSSHPPHM VHQTDTSNET QQVPMNMLKL AQQFSFIWSI 120 DCKYFDFGTG SCPFGTSCFY RHAYRDGRLE EVVLRHLDAD DGSTVIAKNI RLSDFLSRLH 180 L |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462879102 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004965338.1 | 2e-55 | E3 ubiquitin-protein ligase makorin | ||||
Swissprot | Q5ZA07 | 9e-43 | C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin | ||||
TrEMBL | K3XXQ2 | 6e-54 | K3XXQ2_SETIT; Uncharacterized protein | ||||
STRING | Si006712m | 1e-54 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5326 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 8e-25 | C3H family protein |
Publications ? help Back to Top | |||
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