PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462870064
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 362aa    MW: 39364.6 Da    PI: 8.2868
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462870064genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.7e-1079128154
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                r++ +  rE+ RRd++N+ f+eL   l ++     ++++Ka+iL  +++ +k+L
  462870064  79 RKVQKADREKMRRDKLNEQFQELGNALDPD----RPRNDKATILGDTIQMLKDL 128
                5677889********************997....799***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.05E-1377147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-1377151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.81778128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-779128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.44E-779132No hitNo description
SMARTSM003531.2E-784134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
AVISRPLQLG RPASAVSCFL RTRHGRRGDH APPLASALRS GAAMDPRGHH PPEDGFFLTR  60
DADPSQRTEC QGQGSTAARK VQKADREKMR RDKLNEQFQE LGNALDPDRP RNDKATILGD  120
TIQMLKDLTS QVNKLKAEYA SLSEEARELT QEKNELRDEK ASLKSDVDNL NNQYQQRMRV  180
LYPWAGMEPS VVIGPPAPYP YPVPVHIPSG AVPMHPQMQA YPFFRSQTAG TMPSPYMSYT  240
QPCHPPTDQP SNQFNTPVPH SSSHQSNSPA QDCRSKSSTL QQASCRVRSG DAGDVATDLE  300
LKTPGSSAPS HSDTANKDSS SDSKTKKQCL KQINGSTLTE GSSSSRCSSS GPPDVSNSVG  360
DG
Cis-element ? help Back to Top
SourceLink
PlantRegMap462870064
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952384.10.0transcription factor bHLH121
TrEMBLK3YU580.0K3YU58_SETIT; Uncharacterized protein
STRINGSi017804m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117672529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.11e-69bHLH family protein