PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462866888 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 203aa MW: 22489.8 Da PI: 10.1344 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.7 | 1.3e-10 | 5 | 46 | 56 | 99 |
TTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 56 sgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +g+ +l++GW eFv a+++ +g f+vF+++ ++ l+vkvf++ 462866888 5 GGGAFLGRGWPEFVAAHDIGVGWFLVFRHE--GGGMLTVKVFDT 46 56689***********************65..58889*****97 PP | |||||||
2 | B3 | 43.8 | 4.6e-14 | 82 | 164 | 14 | 97 |
T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 14 grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + +v+p f++++ ++ +++s++ +l ++ g+ W+v+ +k +++ +++++GW++F +ng+ eg+ ++++++g++ f +vkvf 462866888 82 KKMVIPPAFVRNYitELAETNSQMPVLLSLCGKYWRVEA--EKDPSGnVFFSGGWSGFLASNGITEGEALLLRYEGNRVF--TVKVF 164 459*******999**999999******************..777777699*************************99999..88877 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.812 | 1 | 47 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.8E-8 | 4 | 46 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.60E-8 | 4 | 45 | No hit | No description |
SuperFamily | SSF101936 | 3.53E-10 | 4 | 49 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.1E-9 | 5 | 49 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.4E-18 | 65 | 169 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.12E-19 | 66 | 169 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.323 | 69 | 167 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.26E-13 | 70 | 164 | No hit | No description |
SMART | SM01019 | 7.8E-9 | 72 | 167 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.4E-12 | 82 | 164 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 203 aa Download sequence Send to blast |
AGRDGGGAFL GRGWPEFVAA HDIGVGWFLV FRHEGGGMLT VKVFDTSFCL RHFSRPLNVA 60 ANGRSRSRRP QFIKPRLPGF MKKMVIPPAF VRNYITELAE TNSQMPVLLS LCGKYWRVEA 120 EKDPSGNVFF SGGWSGFLAS NGITEGEALL LRYEGNRVFT VKVFGLDGCQ KSFGKSTKKM 180 PSGMQQETEQ SERTSSVSYL DAF |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 62 | 70 | GRSRSRRPQ |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462866888 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977888.1 | 1e-62 | putative B3 domain-containing protein Os04g0347400 | ||||
Refseq | XP_022684470.1 | 1e-62 | putative B3 domain-containing protein Os04g0347400 | ||||
Swissprot | Q7XS74 | 2e-56 | Y4474_ORYSJ; Putative B3 domain-containing protein Os04g0347400 | ||||
TrEMBL | A0A1E5W9E3 | 3e-60 | A0A1E5W9E3_9POAL; Putative B3 domain-containing protein | ||||
TrEMBL | A0A368RU49 | 3e-61 | A0A368RU49_SETIT; Uncharacterized protein | ||||
TrEMBL | A0A3L6PWP9 | 2e-59 | A0A3L6PWP9_PANMI; Prolyl 4-hydroxylase 1 | ||||
TrEMBL | K3Y7G4 | 5e-61 | K3Y7G4_SETIT; Uncharacterized protein | ||||
TrEMBL | K3YCY5 | 3e-61 | K3YCY5_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ga02236.1.p | 1e-65 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G66980.1 | 9e-13 | B3 family protein |