PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462857477

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

G2-like

Protein Properties

Length: 264aa MW: 29376.2 Da PI: 6.8593

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462857477	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.7	1.1e-32	48	102	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l +m+v+g+t++hvkSHLQkYRl 462857477 48 KQRLRWTSDLHNRFVDAIAQLGGPDRATPKGVLTVMGVPGITIYHVKSHLQKYRL 102 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.867	45	105	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-30	46	103	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.18E-16	47	102	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-25	48	103	IPR006447	Myb domain, plants
Pfam	PF00249	2.7E-7	50	101	IPR001005	SANT/Myb domain
Pfam	PF14379	5.1E-24	135	180	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MHHMMYHAKS FSVPFAPQRA QNNEHVSNIG AIGGSNISNP ANPVGNGKQR LRWTSDLHNR 60 FVDAIAQLGG PDRATPKGVL TVMGVPGITI YHVKSHLQKY RLAKYIPESP AEGCKEEKKE 120 SSDSLSNTDS APGLQINEAL KMQMEVQKRL HEQLEVQRQL QLRIEAQGKY LQMIIEEQQK 180 LGGSVKVSED QKLSHSPPSL DDYPDSIQPS PKKPKMDELS PDSSRDITQP ELESHLIGPW 240 DQEICGKNIC GVAFPLEDSK QTQV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-23	47	105	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-23	47	105	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-23	47	105	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-23	47	105	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-23	47	105	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-23	47	105	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-23	47	105	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-23	47	105	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462857477

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP098418	0.0	FP098418.1 Phyllostachys edulis cDNA clone: bphyem127d16, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961661.1	1e-177	myb family transcription factor PHL7
Swissprot	Q9SJW0	2e-72	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	K3Z8V2	1e-176	K3Z8V2_SETIT; Uncharacterized protein
STRING	Si022972m	1e-177	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7913	33	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	4e-54	G2-like family protein