PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462855479
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 629aa    MW: 67553.2 Da    PI: 9.8377
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462855479genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.46.2e-09590629448
                HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAv 48 
                +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+
  462855479 590 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAI 629
                799***********************66......999999998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.5E-49185370IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474596.54E-12585629IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.199586629IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.85E-10589629No hitNo description
Gene3DG3DSA:4.10.280.107.1E-11589629IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-6590629IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-4592629IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
GVPFQPGSQA EVRTARSWAA GLGSVVRPQL AAKQARKGSS RKEEEGVVFG VPESTPAPEK  60
FLHQLPKLTS RLDPRGWSFP FSSPRCSDSR GKRSGPAARI PPSLPALDSA ASASIRAQAP  120
QSGIMVMKME IEDDGAVGGG TGGTWTEEDR ALGAAVLGTD AFAYLTKGGG VISQGLVATS  180
LSVDMQNRLQ ELVESDRPGA GWNYAIYWQL SRTKSGDLVL GWGDGSCREP RDGEVAAAAS  240
EGIDDTKQRM RKRVLQRLHI AFGGADEEDY APGIDQVTDT EVFFLASMYF AFPRRVGGPG  300
QVFAAGVPLW IPNSERKVYP TNYCYRGFLA NAAGFRTIVL VPFESGVLEL GSMQHIAESP  360
DVIETIRSVF AGASGNKAAV QKPEGNGSTP TERSPSLAKI FGKDLNLGHP SAAPVVSVSK  420
IDERSWEQRR AAGGSSLLPN VSKGGPSFTW TQARGLNSHQ QKFGNGVLIV SNEAAQRSNG  480
AADSSSATHF QLQKVPPLQK LQLQKLPQIQ KPPPLVTQQQ LQPQVPRQID FSAGSSSKPG  540
VLVTRTSVLD GESADVDGLC KEEGPPPIVE DRRPRKRGRK PANGREEPLN HVEAERQRRE  600
KLNQRFYALR AVVPNISKMD KASLLGDAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-221853709192Transcription factor MYC3
4rqw_B1e-221853709192Transcription factor MYC3
4rs9_A1e-221853709192Transcription factor MYC3
4yz6_A1e-221853709192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1571579RRPRKRGRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462855479
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816895.10.0transcription factor bHLH13-like
TrEMBLA0A3L6SNM90.0A0A3L6SNM9_PANMI; Transcription factor bHLH13-like
STRINGPavir.Ea00030.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.36e-67bHLH family protein