PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462849032 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C2H2 | ||||||||
Protein Properties | Length: 190aa MW: 19598.9 Da PI: 7.0012 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.00029 | 45 | 67 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ CgksF + L H +H 462849032 45 FKCSVCGKSFGSYQALGGHKTSH 67 89********9999888887776 PP | |||||||
2 | zf-C2H2 | 13.3 | 0.00026 | 113 | 135 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k F++ L H r+H 462849032 113 HKCSICHKEFPTGQALGGHKRKH 135 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 3.1E-13 | 45 | 69 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 12.757 | 45 | 72 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.6E-9 | 45 | 67 | No hit | No description |
SMART | SM00355 | 0.011 | 45 | 67 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.9E-4 | 45 | 70 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 47 | 67 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.6E-9 | 108 | 135 | No hit | No description |
Pfam | PF13912 | 8.3E-13 | 112 | 137 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.162 | 113 | 135 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.038 | 113 | 135 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 115 | 135 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MSSAMELLHA VLPEQQHEEE AAALTTSSSG EEGGHVPQGA AAAEFKCSVC GKSFGSYQAL 60 GGHKTSHRAK QPTPPPVEAP VPPPAELIRE PATSSTAAAS SDGGAAAPSS RVHKCSICHK 120 EFPTGQALGG HKRKHYDGGA ASASASVTAA AAETSESVWR CTAKAGKMWL EDEEVQSPLA 180 FKKPRLLMTA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462849032 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008644480.1 | 1e-58 | zinc finger protein 1 | ||||
Swissprot | Q42430 | 4e-55 | ZFP1_WHEAT; Zinc finger protein 1 | ||||
TrEMBL | A0A0Y0SZ20 | 3e-69 | A0A0Y0SZ20_9POAL; C2H2-type zinc finger protein | ||||
STRING | GRMZM2G035103_P01 | 5e-58 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1022 | 36 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19580.2 | 3e-21 | zinc-finger protein 2 |