PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 355494 | ||||||||
Common Name | ARALYDRAFT_355494 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 500aa MW: 56701 Da PI: 9.9957 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.2 | 6.1e-13 | 26 | 95 | 16 | 94 |
EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 16 lvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 + +pk f +++ g ++ + l++ s +W++k+ ++++ +tkGW+eF+ ++L++gD++vF+++g+ l++ 355494 26 ILIPKAFYSKYleGRQEGN--AAELRSdASEITWNIKI--DGRR----MTKGWEEFAVGHNLQVGDILVFRHEGN----LLF 95 789********96555444..5666554999*******..9998....9**********************7663....333 PP | |||||||
2 | B3 | 56.2 | 6.1e-18 | 375 | 459 | 4 | 90 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 v ++ ++l++++l+lp + +++ ++k+ +++l++++gr+W++ l+y+k+sg++ +t GWk+F++ang ++g +++F l+++ ++ 355494 375 VSVTVSNLREDILYLPIRLSRSNILDKKF-HEISLMNKQGRTWTLSLKYSKSSGKFRITHGWKSFCEANGQNAGCTFLFNLVRN-RT 459 56788999***************888766.49************************************************9985.33 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.9E-17 | 7 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.8E-18 | 7 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.434 | 11 | 103 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.22E-13 | 12 | 100 | No hit | No description |
SMART | SM01019 | 4.9E-16 | 14 | 103 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.1E-9 | 26 | 94 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-6 | 245 | 329 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.01E-6 | 250 | 332 | No hit | No description |
SuperFamily | SSF101936 | 3.34E-8 | 250 | 329 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 6.5E-8 | 251 | 334 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 6.076 | 292 | 334 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-19 | 368 | 464 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-17 | 368 | 463 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.789 | 372 | 468 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-19 | 373 | 469 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.5E-16 | 374 | 461 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.93E-13 | 382 | 464 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MANSMFSSSA KPHFLKPILP GFKTYILIPK AFYSKYLEGR QEGNAAELRS DASEITWNIK 60 IDGRRMTKGW EEFAVGHNLQ VGDILVFRHE GNLLFHVTPF GLSCCEILYS QNDEKVVKDK 120 TGKVTRYKTV KKTAKNECSS VDTDFVYLPR GFTTSSGLSK LCNEIILMDE KSRPSTLKLC 180 YHKSRKPPVL RIYPLERDED NIGNHSKKIK QEVEHETVKE ETNVESGKLK RDGLLKKDPQ 240 KVCSSSHDTI FVVPGTASNQ RNDSFHLPKG FTTSSGLSKL CKKIIFMDEK DNRFTVRRGW 300 RGFCCRNGHK TGCFLRLILV RNGKTPVLRI FPLEKDESSI GKNSKEIKQE VEHESAKEEK 360 NVESLSLSDN SSFVVSVTVS NLREDILYLP IRLSRSNILD KKFHEISLMN KQGRTWTLSL 420 KYSKSSGKFR ITHGWKSFCE ANGQNAGCTF LFNLVRNRTS PVLLMTSLWD DIHQSKTASF 480 DNSVGPRRSS MGQEVKIMG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 355494 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB046432 | 1e-114 | AB046432.1 Arabidopsis thaliana DNA, chromosome 5 centromere region, clone:F22D12. | |||
GenBank | CP002688 | 1e-114 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. | |||
GenBank | F18O9 | 1e-114 | AF296831.1 Arabidopsis thaliana BAC F18O9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020874848.1 | 0.0 | LOW QUALITY PROTEIN: B3 domain-containing protein REM-like 3 | ||||
Swissprot | F4KFT6 | 0.0 | REML3_ARATH; B3 domain-containing protein REM-like 3 | ||||
TrEMBL | D7MHL0 | 0.0 | D7MHL0_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pg.C_scaffold_7002667 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17423 | 9 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G32460.1 | 0.0 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | 355494 |
Entrez Gene | 9304464 |