PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 338342
Common NameARALYDRAFT_338342
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 632aa    MW: 74384 Da    PI: 6.7319
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
338342genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.68e-131713010128
     NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykg 111
             +de ++++yLk+ + + +   +++i+ +d+++ +P+++     ++e+  +  + + ++  +  ++    +sg W+   +dk ++s+ +g+  g kk+L f  +
  338342  17 EDEVIISRYLKRMIVNGDSWPNHFIEYADVFNKDPNEIF----SSERPRF-VIVKPRT-GNCGKTDGCDESGCWRIMARDKLIKSEeTGKILGFKKILKFCLK 113
             68899********88888666588**************5....2334444.4444443.45556777789**************98778889*********** PP

     NAM 112 rapkgektdWvmheyrl 128
              +p+  k +Wvm+eyrl
  338342 114 WKPREYKRSWVMEEYRL 130
             ***************98 PP
2NAM33.99.6e-111773025128
     NAM   5 frFhPt.deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktL 106
             + F P+ ++e    yL   ++++ ++      + ++y ++P +L    + +++    + +   +++tg ++    + gyWk   +d++++sk+g+++g kk++
  338342 177 YGFYPHsEQEDDESYLLTIMTSEGNDW-PSYVTNNVYCLHPFELV---DLRDRMFCDYGTCIYANKTGGETDI-YNGGYWKILHRDRPIKSKSGKTIGFKKVF 274
             566664144555678888888888777.4456679999******5...3344555455555556666666665.689************************** PP

     NAM 107 vfy......kgrapkgektdWvmheyrl 128
              fy         + + +k  W+++eyrl
  338342 275 QFYepererIFCNGQEVKIAWIIEEYRL 302
             ***5443221223445799*******98 PP
3NAM44.26e-1433444610128
     NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykg 111
             +de ++++yLk  + + +   +++i ++++++ +P++      ++e+   f + + +++a gk      +sg W+  g+dk ++s+ +g+  g kk+L f k+
  338342 334 EDEVIISRYLKGMIVNGDSWPDHFIVDANVFNKNPNEVF----NSERP-RFVIVKPRTEACGKTDG--CESGCWRIMGRDKLIKSEeTGKILGFKKILKFCKK 429
             688999*******98888666588**************5....23344.45555556666654444..479*************98778889*********** PP

     NAM 112 rapkgektdWvmheyrl 128
             ++p+  k +Wvm+eyrl
  338342 430 TKPREYKRSWVMEEYRL 446
             ***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.628148IPR003441NAC domain
PfamPF023653.3E-817130IPR003441NAC domain
SuperFamilySSF1019411.96E-2517147IPR003441NAC domain
SuperFamilySSF1019411.96E-25159312IPR003441NAC domain
PROSITE profilePS5100519.578173318IPR003441NAC domain
PfamPF023652.1E-5187302IPR003441NAC domain
PROSITE profilePS5100525.43325464IPR003441NAC domain
SuperFamilySSF1019419.55E-27334462IPR003441NAC domain
PfamPF023653.3E-8334446IPR003441NAC domain
SuperFamilySSF1019411.44E-23474627IPR003441NAC domain
PROSITE profilePS5100519.488489628IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MEVSAYDRIK AELLNAEDEV IISRYLKRMI VNGDSWPNHF IEYADVFNKD PNEIFSSERP  60
RFVIVKPRTG NCGKTDGCDE SGCWRIMARD KLIKSEETGK ILGFKKILKF CLKWKPREYK  120
RSWVMEEYRL PNNLNWKQDH VICKIRFLFE AEISFLLAKH FYTTSESLPR NELLPAYGFY  180
PHSEQEDDES YLLTIMTSEG NDWPSYVTNN VYCLHPFELV DLRDRMFCDY GTCIYANKTG  240
GETDIYNGGY WKILHRDRPI KSKSGKTIGF KKVFQFYEPE RERIFCNGQE VKIAWIIEEY  300
RLSEKVKQNK VLFSFIMEND AAYDLIKHEL LNAEDEVIIS RYLKGMIVNG DSWPDHFIVD  360
ANVFNKNPNE VFNSERPRFV IVKPRTEACG KTDGCESGCW RIMGRDKLIK SEETGKILGF  420
KKILKFCKKT KPREYKRSWV MEEYRLTKNL NWKQDHVICK IRLMFEAEIS FLLKKHFYTT  480
SESVLGNGLL PSYGYSSTTQ EEDESYMETI VTCEGNYWPS YVTNDVYCLH PMDLVDPQDP  540
MFHDYGTCIF ANGTCGETDK CDGGYWKILH HDKLITGKVN GFKKVFKFYE TRRYVWEGEY  600
VNVTWTIEEY RLSEKEKEDK VICVIKFTLD N*
Cis-element ? help Back to Top
SourceLink
PlantRegMap338342
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHE6017510.0HE601751.1 Arabidopsis halleri subsp. halleri BAC clone 9G1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020891528.10.0uncharacterized protein LOC110231075
TrEMBLD7KXA30.0D7KXA3_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_20004410.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60350.11e-174NAC domain containing protein 24