PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 334119 | ||||||||
Common Name | ARALYDRAFT_334119 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 331aa MW: 37870.3 Da PI: 9.0739 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.7 | 2e-05 | 173 | 192 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ 334119 173 FACSICSKTFNRYNNMQMHM 192 78*****************9 PP | |||||||
2 | zf-C2H2 | 11 | 0.0014 | 258 | 280 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk k + ++H +++ 334119 258 FSCGKCGKALAVKGDWRTHEKNC 280 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.61E-9 | 152 | 196 | No hit | No description |
PROSITE profile | PS50157 | 10.45 | 173 | 200 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.3E-5 | 173 | 192 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.17 | 173 | 195 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 175 | 195 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 170 | 221 | 253 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 2.79E-5 | 243 | 278 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.0E-4 | 244 | 278 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 190 | 258 | 278 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.538 | 278 | 311 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MSLMNPYKKV LSFESPSFIE WLKPPSSTSS QSILYRMKTR DAISRSNHHQ SQMNMLEPLN 60 TSIQCLPLLN KLMENKSRQA LDDIKEENKD DVVTLQIGFP KYHRGSSDDD SDTTFDHQKK 120 PIKREIIEDG VVMMKKRRKM KFDEEITDSD VEVCGKRFWI PSPAQIHVGP MQFACSICSK 180 TFNRYNNMQM HMWGHGSEFR KGADSLKGTT QPAAILRLPC YCCAEGCKNN INHPRSKPLK 240 DFRTLQTHYK RKHGSKPFSC GKCGKALAVK GDWRTHEKNC GKLWYCTCGS DFKHKRSLKD 300 HIRSFGSGHS PLPSLSFDSF EEDTECVTTE * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 138 | KKRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 334119 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF254448 | 0.0 | AF254448.1 Arabidopsis thaliana WIP3 protein (WIP3) mRNA, complete cds. | |||
GenBank | AK118851 | 0.0 | AK118851.1 Arabidopsis thaliana At1g08290 mRNA for unknown protein, complete cds, clone: RAFL21-18-A22. | |||
GenBank | AY090918 | 0.0 | AY090918.1 Arabidopsis thaliana unknown protein (At1g08290) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002892452.1 | 0.0 | zinc finger protein WIP3 | ||||
Swissprot | Q9SGD1 | 0.0 | ZWIP3_ARATH; Zinc finger protein WIP3 | ||||
TrEMBL | D7KI09 | 0.0 | D7KI09_ARALL; Zinc finger protein | ||||
STRING | fgenesh1_pg.C_scaffold_1000684 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM239 | 28 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08290.1 | 0.0 | WIP domain protein 3 |
Link Out ? help Back to Top | |
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Phytozome | 334119 |
Entrez Gene | 9325748 |
Publications ? help Back to Top | |||
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